RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 TLN2Q9Y4G6 2542 aa1.03□□□□□ -2.25
VPS29-210ENST00000552130 TGP01266 2768 aa1.02□□□□□ -2.25
VPS29-210ENST00000552130 APELAP0DMC3 54 aa1.02□□□□□ -2.25
VPS29-210ENST00000552130 TENM3Q9P273 2699 aa1.02□□□□□ -2.25
VPS29-210ENST00000552130 DEFB4AO15263 64 aa1.01□□□□□ -2.25
VPS29-210ENST00000552130 DNAH7Q8WXX0 4024 aa1.01□□□□□ -2.25
VPS29-210ENST00000552130 STARD9Q9P2P6 4700 aa0.99□□□□□ -2.25
VPS29-210ENST00000552130 A0A096LPF7 62 aa0.99□□□□□ -2.25
VPS29-210ENST00000552130 DNAH8Q96JB1 4490 aa0.98□□□□□ -2.25
VPS29-210ENST00000552130 LINC01556Q5JQF7 62 aa0.98□□□□□ -2.25
VPS29-210ENST00000552130 KRTAP8-1Q8IUC2 63 aa0.98□□□□□ -2.25
VPS29-210ENST00000552130 CMYA5Q8N3K9 4069 aa0.97□□□□□ -2.25
VPS29-210ENST00000552130 ABCA13Q86UQ4 5058 aa0.97□□□□□ -2.25
VPS29-210ENST00000552130 HTN3P15516 51 aa0.97□□□□□ -2.25
VPS29-210ENST00000552130 DYNC1H1Q14204 4646 aaKnown RBP0.96□□□□□ -2.26
VPS29-210ENST00000552130 SMR3BP02814 79 aaPredicted RBP0.96□□□□□ -2.26
VPS29-210ENST00000552130 MT1HL1P0DM35 61 aa0.96□□□□□ -2.26
VPS29-210ENST00000552130 DNAH6Q9C0G6 4158 aa0.96□□□□□ -2.26
VPS29-210ENST00000552130 STAB2Q8WWQ8 2551 aa0.96□□□□□ -2.26
VPS29-210ENST00000552130 PLECQ15149 4684 aaKnown RBP0.95□□□□□ -2.26
VPS29-210ENST00000552130 HTN1P15515 57 aa0.95□□□□□ -2.26
VPS29-210ENST00000552130 MT1AP04731 61 aa0.94□□□□□ -2.26
VPS29-210ENST00000552130 DEFB1P60022 68 aa0.94□□□□□ -2.26
VPS29-210ENST00000552130 KRTAP6-2Q3LI66 62 aa0.94□□□□□ -2.26
VPS29-210ENST00000552130 DNAH17Q9UFH2 4485 aa0.93□□□□□ -2.26
VPS29-210ENST00000552130 DNAH10Q8IVF4 4471 aa0.93□□□□□ -2.26
VPS29-210ENST00000552130 HERC1Q15751 4861 aa0.93□□□□□ -2.26
VPS29-210ENST00000552130 SPRR2AP35326 72 aa0.93□□□□□ -2.26
VPS29-210ENST00000552130 HMCN2Q8NDA2 5059 aa0.93□□□□□ -2.26
VPS29-210ENST00000552130 APOBP04114 4563 aaKnown RBP0.92□□□□□ -2.26
VPS29-210ENST00000552130 PKHD1P08F94 4074 aa0.92□□□□□ -2.26
VPS29-210ENST00000552130 LRP1BQ9NZR2 4599 aa0.91□□□□□ -2.26
VPS29-210ENST00000552130 FSIP2Q5CZC0 6907 aa0.9□□□□□ -2.26
VPS29-210ENST00000552130 DNAH5Q8TE73 4624 aa0.9□□□□□ -2.27
VPS29-210ENST00000552130 RNF213Q63HN8 5207 aa0.9□□□□□ -2.27
VPS29-210ENST00000552130 FAT1Q14517 4588 aa0.88□□□□□ -2.27
VPS29-210ENST00000552130 FAT4Q6V0I7 4981 aa0.87□□□□□ -2.27
VPS29-210ENST00000552130 A0A096LNI7 61 aa0.87□□□□□ -2.27
VPS29-210ENST00000552130 RPS29P62273 56 aaKnown RBP0.87□□□□□ -2.27
VPS29-210ENST00000552130 FAT3Q8TDW7 4589 aa0.87□□□□□ -2.27
VPS29-210ENST00000552130 KRTAP20-1Q3LI63 56 aa0.85□□□□□ -2.27
VPS29-210ENST00000552130 MT1HP80294 61 aa0.83□□□□□ -2.28
VPS29-210ENST00000552130 LRP2P98164 4655 aa0.83□□□□□ -2.28
VPS29-210ENST00000552130 KRTAP19-2Q3LHN2 52 aa0.82□□□□□ -2.28
VPS29-210ENST00000552130 SSPOA2VEC9 5147 aa0.8□□□□□ -2.28
VPS29-210ENST00000552130 KRTAP19-5Q3LI72 72 aa0.8□□□□□ -2.28
VPS29-210ENST00000552130 SPRR2EP22531 72 aa0.79□□□□□ -2.28
VPS29-210ENST00000552130 MUC17Q685J3 4493 aa0.78□□□□□ -2.28
VPS29-210ENST00000552130 KRTAP19-6Q3LI70 58 aa0.78□□□□□ -2.28
VPS29-210ENST00000552130 GPR98Q8WXG9 6306 aa0.77□□□□□ -2.29
VPS29-210ENST00000552130 SPRR2FQ96RM1 72 aa0.77□□□□□ -2.29
VPS29-210ENST00000552130 MACF1Q9UPN3 7388 aaKnown RBP0.76□□□□□ -2.29
VPS29-210ENST00000552130 MT2AP02795 61 aa0.75□□□□□ -2.29
VPS29-210ENST00000552130 AHNAKQ09666 5890 aaKnown RBP0.75□□□□□ -2.29
VPS29-210ENST00000552130 SYNE2Q8WXH0 6885 aaKnown RBP0.75□□□□□ -2.29
VPS29-210ENST00000552130 NEBP20929 6669 aa0.74□□□□□ -2.29
VPS29-210ENST00000552130 MT1FP04733 61 aa0.73□□□□□ -2.29
VPS29-210ENST00000552130 MUC5BQ9HC84 5762 aaPredicted RBP0.71□□□□□ -2.3
VPS29-210ENST00000552130 KMT2DO14686 5537 aa0.69□□□□□ -2.3
VPS29-210ENST00000552130 USH2AO75445 5202 aa0.69□□□□□ -2.3
VPS29-210ENST00000552130 KRTAP19-8Q3LI54 63 aa0.68□□□□□ -2.3
VPS29-210ENST00000552130 SPRR2GQ9BYE4 73 aa0.68□□□□□ -2.3
VPS29-210ENST00000552130 MUC12Q9UKN1 5478 aa0.68□□□□□ -2.3
VPS29-210ENST00000552130 MT1BP07438 61 aa0.66□□□□□ -2.3
VPS29-210ENST00000552130 PHGR1C9JFL3 82 aa0.64□□□□□ -2.31
VPS29-210ENST00000552130 MT1XP80297 61 aa0.6□□□□□ -2.31
VPS29-210ENST00000552130 DSTQ03001 7570 aaKnown RBP0.58□□□□□ -2.32
VPS29-210ENST00000552130 MT1GP13640 62 aa0.57□□□□□ -2.32
VPS29-210ENST00000552130 MDN1Q9NU22 5596 aa0.56□□□□□ -2.32
VPS29-210ENST00000552130 MUC5ACP98088 5654 aa0.56□□□□□ -2.32
VPS29-210ENST00000552130 MT1EP04732 61 aa0.55□□□□□ -2.32
VPS29-210ENST00000552130 KRTAP19-7Q3SYF9 63 aa0.55□□□□□ -2.32
VPS29-210ENST00000552130 MT4P47944 62 aa0.53□□□□□ -2.32
VPS29-210ENST00000552130 MT1MQ8N339 61 aa0.52□□□□□ -2.33
VPS29-210ENST00000552130 KRTAP20-2Q3LI61 65 aa0.51□□□□□ -2.33
VPS29-210ENST00000552130 MT1LQ93083 61 aa0.5□□□□□ -2.33
VPS29-210ENST00000552130 KRTAP6-1Q3LI64 71 aa0.41□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms