RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 RPS28P62857 69 aaKnown RBP4□□□□□ -1.77
VTI1BP3-201ENST00000550220 MT1GP13640 62 aa3.99□□□□□ -1.77
VTI1BP3-201ENST00000550220 KRTAP12-1P59990 96 aa3.99□□□□□ -1.77
VTI1BP3-201ENST00000550220 A0A1B0GU69 56 aa3.98□□□□□ -1.77
VTI1BP3-201ENST00000550220 PP632Q6XCG6 107 aa3.98□□□□□ -1.77
VTI1BP3-201ENST00000550220 GPR98Q8WXG9 6306 aa3.98□□□□□ -1.77
VTI1BP3-201ENST00000550220 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
VTI1BP3-201ENST00000550220 V9GYY9 64 aa3.91□□□□□ -1.78
VTI1BP3-201ENST00000550220 TNP1P09430 55 aa3.9□□□□□ -1.79
VTI1BP3-201ENST00000550220 PRR15LQ9BU68 103 aa3.89□□□□□ -1.79
VTI1BP3-201ENST00000550220 A8MU10 97 aa3.87□□□□□ -1.79
VTI1BP3-201ENST00000550220 MT1LQ93083 61 aa3.86□□□□□ -1.79
VTI1BP3-201ENST00000550220 MT1MQ8N339 61 aa3.85□□□□□ -1.79
VTI1BP3-201ENST00000550220 C10orf95Q9H7T3 257 aa3.83□□□□□ -1.8
VTI1BP3-201ENST00000550220 Q1T7F1 81 aa3.82□□□□□ -1.8
VTI1BP3-201ENST00000550220 LCE3AQ5TA76 89 aa3.82□□□□□ -1.8
VTI1BP3-201ENST00000550220 LINC01558Q9Y6Z2 57 aa3.81□□□□□ -1.8
VTI1BP3-201ENST00000550220 KRTAP5-3Q6L8H2 238 aa3.78□□□□□ -1.8
VTI1BP3-201ENST00000550220 MT4P47944 62 aa3.76□□□□□ -1.81
VTI1BP3-201ENST00000550220 HMCN1Q96RW7 5635 aa3.74□□□□□ -1.81
VTI1BP3-201ENST00000550220 KRTAP5-4Q6L8H1 288 aa3.74□□□□□ -1.81
VTI1BP3-201ENST00000550220 UQCR11O14957 56 aa3.73□□□□□ -1.81
VTI1BP3-201ENST00000550220 KRTAP12-3P60328 96 aa3.72□□□□□ -1.81
VTI1BP3-201ENST00000550220 SVIPQ8NHG7 77 aa3.72□□□□□ -1.81
VTI1BP3-201ENST00000550220 KRTAP4-3Q9BYR4 195 aa3.72□□□□□ -1.81
VTI1BP3-201ENST00000550220 PSPHP1O15172 72 aa3.71□□□□□ -1.82
VTI1BP3-201ENST00000550220 A6NED7 52 aa3.65□□□□□ -1.83
VTI1BP3-201ENST00000550220 KRTAP25-1Q3LHN0 102 aa3.65□□□□□ -1.83
VTI1BP3-201ENST00000550220 K7ERS5 55 aa3.63□□□□□ -1.83
VTI1BP3-201ENST00000550220 AHNAK2Q8IVF2 5795 aa3.63□□□□□ -1.83
VTI1BP3-201ENST00000550220 MIR22HGQ0VDD5 57 aa3.62□□□□□ -1.83
VTI1BP3-201ENST00000550220 KRTAP5-10Q6L8G5 202 aa3.59□□□□□ -1.83
VTI1BP3-201ENST00000550220 CDC42SE1Q9NRR8 79 aa3.56□□□□□ -1.84
VTI1BP3-201ENST00000550220 SPRR5A0A1B0GTR4 108 aa3.55□□□□□ -1.84
VTI1BP3-201ENST00000550220 KRTAP12-4P60329 112 aa3.54□□□□□ -1.84
VTI1BP3-201ENST00000550220 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
VTI1BP3-201ENST00000550220 BRK1Q8WUW1 75 aa3.53□□□□□ -1.84
VTI1BP3-201ENST00000550220 KRTAP20-2Q3LI61 65 aa3.52□□□□□ -1.85
VTI1BP3-201ENST00000550220 A0A0A0MQY5 61 aa3.51□□□□□ -1.85
VTI1BP3-201ENST00000550220 KRTAP5-7Q6L8G8 165 aa3.48□□□□□ -1.85
VTI1BP3-201ENST00000550220 SYNE1Q8NF91 8797 aaKnown RBP3.47□□□□□ -1.85
VTI1BP3-201ENST00000550220 PRO0628Q9UI54 55 aa3.45□□□□□ -1.86
VTI1BP3-201ENST00000550220 LCE3CQ5T5A8 94 aa3.42□□□□□ -1.86
VTI1BP3-201ENST00000550220 PMAIP1Q13794 54 aa3.4□□□□□ -1.87
VTI1BP3-201ENST00000550220 ROMO1P60602 79 aa3.32□□□□□ -1.88
VTI1BP3-201ENST00000550220 MT1AP04731 61 aa3.3□□□□□ -1.88
VTI1BP3-201ENST00000550220 MT3P25713 68 aa3.28□□□□□ -1.88
VTI1BP3-201ENST00000550220 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
VTI1BP3-201ENST00000550220 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
VTI1BP3-201ENST00000550220 KTN1-AS1Q86SY8 53 aa3.19□□□□□ -1.9
VTI1BP3-201ENST00000550220 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.91
VTI1BP3-201ENST00000550220 KRTAP5-8O75690 187 aa3.13□□□□□ -1.91
VTI1BP3-201ENST00000550220 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
VTI1BP3-201ENST00000550220 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.91
VTI1BP3-201ENST00000550220 PRAC1Q96KF2 57 aa3.05□□□□□ -1.92
VTI1BP3-201ENST00000550220 AHNAKQ09666 5890 aaKnown RBP3.04□□□□□ -1.92
VTI1BP3-201ENST00000550220 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.92
VTI1BP3-201ENST00000550220 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
VTI1BP3-201ENST00000550220 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
VTI1BP3-201ENST00000550220 MUC5ACP98088 5654 aa3□□□□□ -1.93
VTI1BP3-201ENST00000550220 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
VTI1BP3-201ENST00000550220 KRTAP5-1Q6L8H4 278 aa2.92□□□□□ -1.94
VTI1BP3-201ENST00000550220 NDUFAF8A1L188 74 aa2.89□□□□□ -1.95
VTI1BP3-201ENST00000550220 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
VTI1BP3-201ENST00000550220 LUZP6Q538Z0 58 aa2.7□□□□□ -1.98
VTI1BP3-201ENST00000550220 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
VTI1BP3-201ENST00000550220 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
VTI1BP3-201ENST00000550220 LCE3EQ5T5B0 92 aa2.52□□□□□ -2.01
VTI1BP3-201ENST00000550220 LCE3DQ9BYE3 92 aa2.46□□□□□ -2.02
VTI1BP3-201ENST00000550220 KRTAP4-4Q9BYR3 166 aa2.42□□□□□ -2.02
VTI1BP3-201ENST00000550220 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
VTI1BP3-201ENST00000550220 INE1O15225 51 aa2.13□□□□□ -2.07
VTI1BP3-201ENST00000550220 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
VTI1BP3-201ENST00000550220 MUC19Q7Z5P9 8384 aa1.92□□□□□ -2.1
VTI1BP3-201ENST00000550220 PRM1P04553 51 aa1.67□□□□□ -2.14
VTI1BP3-201ENST00000550220 KRTAP21-1Q3LI58 79 aa1.63□□□□□ -2.15
VTI1BP3-201ENST00000550220 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 98.9 ms