RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 NDUFAF8A1L188 74 aa4.95□□□□□ -1.62
PRPF40B-210ENST00000549547 KRTAP2-3P0C7H8 128 aa4.94□□□□□ -1.62
PRPF40B-210ENST00000549547 KRTAP2-4Q9BYR9 128 aa4.94□□□□□ -1.62
PRPF40B-210ENST00000549547 C10orf95Q9H7T3 257 aa4.93□□□□□ -1.62
PRPF40B-210ENST00000549547 SPRR2DP22532 72 aa4.91□□□□□ -1.62
PRPF40B-210ENST00000549547 TNP1P09430 55 aa4.89□□□□□ -1.63
PRPF40B-210ENST00000549547 KRTAP19-7Q3SYF9 63 aa4.86□□□□□ -1.63
PRPF40B-210ENST00000549547 MT1EP04732 61 aa4.82□□□□□ -1.64
PRPF40B-210ENST00000549547 LUZP6Q538Z0 58 aa4.82□□□□□ -1.64
PRPF40B-210ENST00000549547 KRTAP2-2Q9BYT5 123 aa4.79□□□□□ -1.64
PRPF40B-210ENST00000549547 KRTAP2-1Q9BYU5 128 aa4.79□□□□□ -1.64
PRPF40B-210ENST00000549547 KRTAP19-5Q3LI72 72 aa4.78□□□□□ -1.64
PRPF40B-210ENST00000549547 LCE3AQ5TA76 89 aa4.76□□□□□ -1.65
PRPF40B-210ENST00000549547 LCE3BQ5TA77 95 aa4.76□□□□□ -1.65
PRPF40B-210ENST00000549547 KRTAP19-3Q7Z4W3 81 aa4.76□□□□□ -1.65
PRPF40B-210ENST00000549547 LCE5AQ5TCM9 118 aa4.74□□□□□ -1.65
PRPF40B-210ENST00000549547 MT1GP13640 62 aa4.69□□□□□ -1.66
PRPF40B-210ENST00000549547 PP632Q6XCG6 107 aa4.69□□□□□ -1.66
PRPF40B-210ENST00000549547 DSTQ03001 7570 aaKnown RBP4.63□□□□□ -1.67
PRPF40B-210ENST00000549547 MT1LQ93083 61 aa4.63□□□□□ -1.67
PRPF40B-210ENST00000549547 KRTAP23-1A1A580 65 aa4.6□□□□□ -1.67
PRPF40B-210ENST00000549547 KRTAP12-3P60328 96 aa4.6□□□□□ -1.67
PRPF40B-210ENST00000549547 MT1MQ8N339 61 aa4.58□□□□□ -1.68
PRPF40B-210ENST00000549547 KRTAP19-4Q3LI73 84 aa4.42□□□□□ -1.7
PRPF40B-210ENST00000549547 KRTAP4-3Q9BYR4 195 aa4.42□□□□□ -1.7
PRPF40B-210ENST00000549547 LCE4AQ5TA78 99 aa4.37□□□□□ -1.71
PRPF40B-210ENST00000549547 KRTAP4-7Q9BYR0 210 aa4.36□□□□□ -1.71
PRPF40B-210ENST00000549547 KRTAP4-9Q9BYQ8 210 aa4.34□□□□□ -1.71
PRPF40B-210ENST00000549547 GPR98Q8WXG9 6306 aa4.31□□□□□ -1.72
PRPF40B-210ENST00000549547 INE1O15225 51 aa4.3□□□□□ -1.72
PRPF40B-210ENST00000549547 HMCN1Q96RW7 5635 aa4.28□□□□□ -1.72
PRPF40B-210ENST00000549547 SPRR5A0A1B0GTR4 108 aa4.28□□□□□ -1.72
PRPF40B-210ENST00000549547 LCE1DQ5T752 114 aa4.28□□□□□ -1.72
PRPF40B-210ENST00000549547 KRTAP5-4Q6L8H1 288 aa4.28□□□□□ -1.72
PRPF40B-210ENST00000549547 MT4P47944 62 aa4.25□□□□□ -1.73
PRPF40B-210ENST00000549547 LCE3CQ5T5A8 94 aa4.25□□□□□ -1.73
PRPF40B-210ENST00000549547 KRTAP5-5Q701N2 237 aaPredicted RBP4.18□□□□□ -1.74
PRPF40B-210ENST00000549547 KRTAP4-6Q9BYQ5 205 aa4.13□□□□□ -1.75
PRPF40B-210ENST00000549547 LOC100996750A0A140TA64 210 aa4.12□□□□□ -1.75
PRPF40B-210ENST00000549547 AHNAK2Q8IVF2 5795 aa4.11□□□□□ -1.75
PRPF40B-210ENST00000549547 KRTAP12-4P60329 112 aa4.08□□□□□ -1.76
PRPF40B-210ENST00000549547 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
PRPF40B-210ENST00000549547 SYNE1Q8NF91 8797 aaKnown RBP4.01□□□□□ -1.77
PRPF40B-210ENST00000549547 MT1AP04731 61 aa3.96□□□□□ -1.78
PRPF40B-210ENST00000549547 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
PRPF40B-210ENST00000549547 KRTAP5-10Q6L8G5 202 aa3.92□□□□□ -1.78
PRPF40B-210ENST00000549547 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
PRPF40B-210ENST00000549547 KRTAP5-3Q6L8H2 238 aa3.89□□□□□ -1.79
PRPF40B-210ENST00000549547 KRTAP5-7Q6L8G8 165 aa3.8□□□□□ -1.8
PRPF40B-210ENST00000549547 KRTAP9-4Q9BYQ2 154 aa3.8□□□□□ -1.8
PRPF40B-210ENST00000549547 KRTAP5-2Q701N4 177 aa3.78□□□□□ -1.8
PRPF40B-210ENST00000549547 KRTAP6-2Q3LI66 62 aa3.7□□□□□ -1.82
PRPF40B-210ENST00000549547 KRTAP4-11Q9BYQ6 195 aa3.64□□□□□ -1.83
PRPF40B-210ENST00000549547 MT3P25713 68 aa3.63□□□□□ -1.83
PRPF40B-210ENST00000549547 OBSCNQ5VST9 7968 aa3.5□□□□□ -1.85
PRPF40B-210ENST00000549547 KRTAP5-8O75690 187 aa3.5□□□□□ -1.85
PRPF40B-210ENST00000549547 AHNAKQ09666 5890 aaKnown RBP3.38□□□□□ -1.87
PRPF40B-210ENST00000549547 MUC5ACP98088 5654 aa3.38□□□□□ -1.87
PRPF40B-210ENST00000549547 MUC5BQ9HC84 5762 aaPredicted RBP3.35□□□□□ -1.87
PRPF40B-210ENST00000549547 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
PRPF40B-210ENST00000549547 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
PRPF40B-210ENST00000549547 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
PRPF40B-210ENST00000549547 LCE3DQ9BYE3 92 aa3.11□□□□□ -1.91
PRPF40B-210ENST00000549547 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
PRPF40B-210ENST00000549547 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
PRPF40B-210ENST00000549547 LCE1CQ5T751 118 aa3.05□□□□□ -1.92
PRPF40B-210ENST00000549547 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
PRPF40B-210ENST00000549547 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.8□□□□□ -1.96
PRPF40B-210ENST00000549547 KRTAP5-11Q6L8G4 156 aa2.75□□□□□ -1.97
PRPF40B-210ENST00000549547 KRTAP4-12Q9BQ66 201 aa2.74□□□□□ -1.97
PRPF40B-210ENST00000549547 PRM1P04553 51 aa2.68□□□□□ -1.98
PRPF40B-210ENST00000549547 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
PRPF40B-210ENST00000549547 KRTAP21-2Q3LI59 83 aa2.56□□□□□ -2
PRPF40B-210ENST00000549547 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
PRPF40B-210ENST00000549547 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
PRPF40B-210ENST00000549547 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
PRPF40B-210ENST00000549547 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
PRPF40B-210ENST00000549547 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 44.1 ms