RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 KRTAP10-7P60409 375 aaPredicted RBP5.39□□□□□ -1.55
CDX2-202ENST00000548877 ROMO1P60602 79 aa5.37□□□□□ -1.55
CDX2-202ENST00000548877 KRTAP4-9Q9BYQ8 210 aa5.33□□□□□ -1.56
CDX2-202ENST00000548877 CAMK2N1Q7Z7J9 78 aa5.29□□□□□ -1.56
CDX2-202ENST00000548877 LCE5AQ5TCM9 118 aa5.22□□□□□ -1.57
CDX2-202ENST00000548877 LCE1DQ5T752 114 aa5.19□□□□□ -1.58
CDX2-202ENST00000548877 PRAC1Q96KF2 57 aa5.19□□□□□ -1.58
CDX2-202ENST00000548877 KRTAP25-1Q3LHN0 102 aa5.15□□□□□ -1.59
CDX2-202ENST00000548877 HMCN1Q96RW7 5635 aa5.12□□□□□ -1.59
CDX2-202ENST00000548877 KRTAP19-3Q7Z4W3 81 aa5.12□□□□□ -1.59
CDX2-202ENST00000548877 C10orf95Q9H7T3 257 aa5.12□□□□□ -1.59
CDX2-202ENST00000548877 AHNAK2Q8IVF2 5795 aa5.12□□□□□ -1.59
CDX2-202ENST00000548877 KRTAP19-7Q3SYF9 63 aa5.1□□□□□ -1.59
CDX2-202ENST00000548877 LCE4AQ5TA78 99 aa5.09□□□□□ -1.59
CDX2-202ENST00000548877 KRTAP5-10Q6L8G5 202 aa5.08□□□□□ -1.6
CDX2-202ENST00000548877 MT1EP04732 61 aa5.07□□□□□ -1.6
CDX2-202ENST00000548877 TNP1P09430 55 aa5.07□□□□□ -1.6
CDX2-202ENST00000548877 MT4P47944 62 aa5.03□□□□□ -1.6
CDX2-202ENST00000548877 PP632Q6XCG6 107 aa5.03□□□□□ -1.6
CDX2-202ENST00000548877 KRTAP23-1A1A580 65 aa4.99□□□□□ -1.61
CDX2-202ENST00000548877 MT1GP13640 62 aa4.97□□□□□ -1.61
CDX2-202ENST00000548877 KRTAP5-7Q6L8G8 165 aa4.96□□□□□ -1.62
CDX2-202ENST00000548877 KRTAP5-4Q6L8H1 288 aa4.95□□□□□ -1.62
CDX2-202ENST00000548877 KRTAP4-6Q9BYQ5 205 aa4.88□□□□□ -1.63
CDX2-202ENST00000548877 KRTAP5-3Q6L8H2 238 aa4.85□□□□□ -1.63
CDX2-202ENST00000548877 MT1MQ8N339 61 aa4.85□□□□□ -1.63
CDX2-202ENST00000548877 KRTAP19-5Q3LI72 72 aa4.81□□□□□ -1.64
CDX2-202ENST00000548877 MT1LQ93083 61 aa4.76□□□□□ -1.65
CDX2-202ENST00000548877 LCE3AQ5TA76 89 aa4.72□□□□□ -1.65
CDX2-202ENST00000548877 KRTAP4-3Q9BYR4 195 aa4.72□□□□□ -1.65
CDX2-202ENST00000548877 KRTAP20-2Q3LI61 65 aa4.66□□□□□ -1.66
CDX2-202ENST00000548877 SPRR5A0A1B0GTR4 108 aa4.64□□□□□ -1.67
CDX2-202ENST00000548877 KRTAP12-3P60328 96 aa4.59□□□□□ -1.67
CDX2-202ENST00000548877 KRTAP5-5Q701N2 237 aaPredicted RBP4.54□□□□□ -1.68
CDX2-202ENST00000548877 KRTAP15-1Q3LI76 137 aa4.53□□□□□ -1.68
CDX2-202ENST00000548877 KRTAP12-4P60329 112 aa4.48□□□□□ -1.69
CDX2-202ENST00000548877 KRTAP4-7Q9BYR0 210 aa4.47□□□□□ -1.69
CDX2-202ENST00000548877 KRTAP19-4Q3LI73 84 aa4.46□□□□□ -1.7
CDX2-202ENST00000548877 LUZP6Q538Z0 58 aa4.4□□□□□ -1.71
CDX2-202ENST00000548877 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
CDX2-202ENST00000548877 KRTAP4-11Q9BYQ6 195 aa4.36□□□□□ -1.71
CDX2-202ENST00000548877 AHNAKQ09666 5890 aaKnown RBP4.34□□□□□ -1.72
CDX2-202ENST00000548877 H3BS24 57 aa4.31□□□□□ -1.72
CDX2-202ENST00000548877 MUC5ACP98088 5654 aa4.29□□□□□ -1.72
CDX2-202ENST00000548877 LCE3CQ5T5A8 94 aa4.28□□□□□ -1.72
CDX2-202ENST00000548877 MUC5BQ9HC84 5762 aaPredicted RBP4.26□□□□□ -1.73
CDX2-202ENST00000548877 LOC100996750A0A140TA64 210 aa4.26□□□□□ -1.73
CDX2-202ENST00000548877 KRTAP5-2Q701N4 177 aa4.26□□□□□ -1.73
CDX2-202ENST00000548877 KRTAP5-8O75690 187 aa4.24□□□□□ -1.73
CDX2-202ENST00000548877 NDUFAF8A1L188 74 aa4.22□□□□□ -1.73
CDX2-202ENST00000548877 KRTAP9-9Q9BYP9 154 aa4.07□□□□□ -1.76
CDX2-202ENST00000548877 A0A0A0MQY5 61 aa4.06□□□□□ -1.76
CDX2-202ENST00000548877 MT1AP04731 61 aa4.06□□□□□ -1.76
CDX2-202ENST00000548877 KRTAP6-1Q3LI64 71 aa4.04□□□□□ -1.76
CDX2-202ENST00000548877 OBSCNQ5VST9 7968 aa4.01□□□□□ -1.77
CDX2-202ENST00000548877 KRTAP9-4Q9BYQ2 154 aa3.97□□□□□ -1.77
CDX2-202ENST00000548877 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
CDX2-202ENST00000548877 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
CDX2-202ENST00000548877 KRTAP5-1Q6L8H4 278 aa3.89□□□□□ -1.79
CDX2-202ENST00000548877 MT3P25713 68 aa3.72□□□□□ -1.81
CDX2-202ENST00000548877 INE1O15225 51 aa3.6□□□□□ -1.83
CDX2-202ENST00000548877 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
CDX2-202ENST00000548877 KRTAP4-2Q9BYR5 136 aa3.4□□□□□ -1.87
CDX2-202ENST00000548877 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
CDX2-202ENST00000548877 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
CDX2-202ENST00000548877 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
CDX2-202ENST00000548877 LCE3EQ5T5B0 92 aa3.18□□□□□ -1.9
CDX2-202ENST00000548877 KRTAP4-12Q9BQ66 201 aa3.18□□□□□ -1.9
CDX2-202ENST00000548877 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
CDX2-202ENST00000548877 LCE1FQ5T754 118 aa3.09□□□□□ -1.91
CDX2-202ENST00000548877 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.98□□□□□ -1.93
CDX2-202ENST00000548877 PHGR1C9JFL3 82 aa2.94□□□□□ -1.94
CDX2-202ENST00000548877 PRM1P04553 51 aa2.76□□□□□ -1.97
CDX2-202ENST00000548877 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
CDX2-202ENST00000548877 MUC19Q7Z5P9 8384 aa2.5□□□□□ -2.01
CDX2-202ENST00000548877 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
CDX2-202ENST00000548877 KRTAP21-1Q3LI58 79 aa2.26□□□□□ -2.05
CDX2-202ENST00000548877 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 78.2 ms