RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KRTAP12-4P60329 112 aa5.68□□□□□ -1.5
VPS29-204ENST00000548259 KRTAP12-1P59990 96 aa5.67□□□□□ -1.5
VPS29-204ENST00000548259 LCE3AQ5TA76 89 aa5.67□□□□□ -1.5
VPS29-204ENST00000548259 A0A1B0GU33 70 aa5.64□□□□□ -1.51
VPS29-204ENST00000548259 TNP1P09430 55 aa5.64□□□□□ -1.51
VPS29-204ENST00000548259 SNURFQ9Y675 71 aa5.64□□□□□ -1.51
VPS29-204ENST00000548259 KRTAP5-5Q701N2 237 aaPredicted RBP5.56□□□□□ -1.52
VPS29-204ENST00000548259 COA5Q86WW8 74 aa5.54□□□□□ -1.52
VPS29-204ENST00000548259 SMIM26A0A096LP01 95 aa5.53□□□□□ -1.52
VPS29-204ENST00000548259 KRTAP12-3P60328 96 aa5.5□□□□□ -1.53
VPS29-204ENST00000548259 A0A1B0GV90 55 aa5.42□□□□□ -1.54
VPS29-204ENST00000548259 SYNE1Q8NF91 8797 aaKnown RBP5.38□□□□□ -1.55
VPS29-204ENST00000548259 A8MU10 97 aa5.36□□□□□ -1.55
VPS29-204ENST00000548259 SERP2Q8N6R1 65 aa5.35□□□□□ -1.55
VPS29-204ENST00000548259 A0A1B0GU69 56 aa5.33□□□□□ -1.56
VPS29-204ENST00000548259 AHNAKQ09666 5890 aaKnown RBP5.31□□□□□ -1.56
VPS29-204ENST00000548259 KRTAP19-4Q3LI73 84 aa5.26□□□□□ -1.57
VPS29-204ENST00000548259 MUC5ACP98088 5654 aa5.25□□□□□ -1.57
VPS29-204ENST00000548259 K7ERU9 68 aa5.21□□□□□ -1.58
VPS29-204ENST00000548259 MUC5BQ9HC84 5762 aaPredicted RBP5.21□□□□□ -1.58
VPS29-204ENST00000548259 KRTAP5-8O75690 187 aa5.19□□□□□ -1.58
VPS29-204ENST00000548259 KRTAP5-2Q701N4 177 aa5.19□□□□□ -1.58
VPS29-204ENST00000548259 PRR15LQ9BU68 103 aa5.08□□□□□ -1.6
VPS29-204ENST00000548259 MT1AP04731 61 aa5.06□□□□□ -1.6
VPS29-204ENST00000548259 KRTAP25-1Q3LHN0 102 aa5.06□□□□□ -1.6
VPS29-204ENST00000548259 OBSCNQ5VST9 7968 aa5.03□□□□□ -1.6
VPS29-204ENST00000548259 KRTAP6-1Q3LI64 71 aa5.03□□□□□ -1.6
VPS29-204ENST00000548259 H7BZZ5 65 aa5.02□□□□□ -1.61
VPS29-204ENST00000548259 COX7CP15954 63 aa5□□□□□ -1.61
VPS29-204ENST00000548259 LCE3CQ5T5A8 94 aa5□□□□□ -1.61
VPS29-204ENST00000548259 KRTAP15-1Q3LI76 137 aa4.97□□□□□ -1.61
VPS29-204ENST00000548259 KRTAP6-2Q3LI66 62 aa4.93□□□□□ -1.62
VPS29-204ENST00000548259 UQCR11O14957 56 aa4.85□□□□□ -1.63
VPS29-204ENST00000548259 KRTAP23-1A1A580 65 aa4.84□□□□□ -1.63
VPS29-204ENST00000548259 K7ERS5 55 aa4.8□□□□□ -1.64
VPS29-204ENST00000548259 LINC01558Q9Y6Z2 57 aa4.79□□□□□ -1.64
VPS29-204ENST00000548259 KRTAP5-1Q6L8H4 278 aa4.75□□□□□ -1.65
VPS29-204ENST00000548259 MT3P25713 68 aa4.71□□□□□ -1.66
VPS29-204ENST00000548259 MIR22HGQ0VDD5 57 aa4.67□□□□□ -1.66
VPS29-204ENST00000548259 ATP5EP56381 51 aaPredicted RBP4.66□□□□□ -1.66
VPS29-204ENST00000548259 KRTAP9-6A8MVA2 160 aa4.63□□□□□ -1.67
VPS29-204ENST00000548259 ANAPC13Q9BS18 74 aa4.56□□□□□ -1.68
VPS29-204ENST00000548259 RPS28P62857 69 aaKnown RBP4.54□□□□□ -1.68
VPS29-204ENST00000548259 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
VPS29-204ENST00000548259 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.42□□□□□ -1.7
VPS29-204ENST00000548259 CCDC179H3BU77 68 aa4.41□□□□□ -1.7
VPS29-204ENST00000548259 CDC42SE1Q9NRR8 79 aa4.4□□□□□ -1.71
VPS29-204ENST00000548259 Q1T7F1 81 aa4.31□□□□□ -1.72
VPS29-204ENST00000548259 TMEM258P61165 79 aa4.29□□□□□ -1.72
VPS29-204ENST00000548259 ROMO1P60602 79 aa4.27□□□□□ -1.73
VPS29-204ENST00000548259 PSPHP1O15172 72 aa4.25□□□□□ -1.73
VPS29-204ENST00000548259 V9GYY9 64 aa4.25□□□□□ -1.73
VPS29-204ENST00000548259 LCE1BQ5T7P3 118 aa4.21□□□□□ -1.74
VPS29-204ENST00000548259 A6NED7 52 aa4.14□□□□□ -1.75
VPS29-204ENST00000548259 H3BS24 57 aa4.13□□□□□ -1.75
VPS29-204ENST00000548259 KRTAP5-11Q6L8G4 156 aa4.11□□□□□ -1.75
VPS29-204ENST00000548259 LCE1CQ5T751 118 aa4.1□□□□□ -1.75
VPS29-204ENST00000548259 LCE1FQ5T754 118 aa3.81□□□□□ -1.8
VPS29-204ENST00000548259 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
VPS29-204ENST00000548259 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
VPS29-204ENST00000548259 LCE3DQ9BYE3 92 aa3.53□□□□□ -1.84
VPS29-204ENST00000548259 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
VPS29-204ENST00000548259 SVIPQ8NHG7 77 aa3.3□□□□□ -1.88
VPS29-204ENST00000548259 LCE3EQ5T5B0 92 aa3.24□□□□□ -1.89
VPS29-204ENST00000548259 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
VPS29-204ENST00000548259 BRK1Q8WUW1 75 aa2.99□□□□□ -1.93
VPS29-204ENST00000548259 PCP4P48539 62 aa2.87□□□□□ -1.95
VPS29-204ENST00000548259 KRTAP21-1Q3LI58 79 aa2.83□□□□□ -1.96
VPS29-204ENST00000548259 A0A0A0MQY5 61 aa2.77□□□□□ -1.97
VPS29-204ENST00000548259 PMAIP1Q13794 54 aa2.7□□□□□ -1.98
VPS29-204ENST00000548259 PRAC1Q96KF2 57 aa2.66□□□□□ -1.98
VPS29-204ENST00000548259 LUZP6Q538Z0 58 aa2.53□□□□□ -2
VPS29-204ENST00000548259 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
VPS29-204ENST00000548259 PRM1P04553 51 aa2.11□□□□□ -2.07
VPS29-204ENST00000548259 NDUFAF8A1L188 74 aa2.09□□□□□ -2.07
VPS29-204ENST00000548259 PRO0628Q9UI54 55 aa2.04□□□□□ -2.08
VPS29-204ENST00000548259 KTN1-AS1Q86SY8 53 aa2□□□□□ -2.09
VPS29-204ENST00000548259 INE1O15225 51 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 93 ms