RNA–Protein interactions for RNA: ENST00000546215.5

SCARB1-211, Transcript of scavenger receptor class B member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARB1, Length 1,597 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-211ENST00000546215 ROMO1P60602 79 aa7.52□□□□□ -1.21
SCARB1-211ENST00000546215 LCE5AQ5TCM9 118 aa7.51□□□□□ -1.21
SCARB1-211ENST00000546215 KRTAP2-3P0C7H8 128 aa7.5□□□□□ -1.21
SCARB1-211ENST00000546215 KRTAP2-4Q9BYR9 128 aa7.5□□□□□ -1.21
SCARB1-211ENST00000546215 KRTAP12-3P60328 96 aa7.45□□□□□ -1.22
SCARB1-211ENST00000546215 KRTAP23-1A1A580 65 aa7.44□□□□□ -1.22
SCARB1-211ENST00000546215 MT1LQ93083 61 aa7.43□□□□□ -1.22
SCARB1-211ENST00000546215 MT1GP13640 62 aa7.41□□□□□ -1.22
SCARB1-211ENST00000546215 PMAIP1Q13794 54 aa7.36□□□□□ -1.23
SCARB1-211ENST00000546215 LCE3BQ5TA77 95 aa7.33□□□□□ -1.24
SCARB1-211ENST00000546215 PP632Q6XCG6 107 aa7.32□□□□□ -1.24
SCARB1-211ENST00000546215 MT1MQ8N339 61 aa7.29□□□□□ -1.24
SCARB1-211ENST00000546215 KRTAP2-2Q9BYT5 123 aa7.29□□□□□ -1.24
SCARB1-211ENST00000546215 KRTAP2-1Q9BYU5 128 aa7.29□□□□□ -1.24
SCARB1-211ENST00000546215 DSTQ03001 7570 aaKnown RBP7.27□□□□□ -1.25
SCARB1-211ENST00000546215 KTN1-AS1Q86SY8 53 aa7.14□□□□□ -1.27
SCARB1-211ENST00000546215 KRTAP4-3Q9BYR4 195 aa7.12□□□□□ -1.27
SCARB1-211ENST00000546215 KRTAP15-1Q3LI76 137 aa7.11□□□□□ -1.27
SCARB1-211ENST00000546215 KRTAP4-7Q9BYR0 210 aa7.1□□□□□ -1.27
SCARB1-211ENST00000546215 KRTAP19-4Q3LI73 84 aa7.04□□□□□ -1.28
SCARB1-211ENST00000546215 LCE3CQ5T5A8 94 aa6.91□□□□□ -1.3
SCARB1-211ENST00000546215 PRAC1Q96KF2 57 aa6.79□□□□□ -1.32
SCARB1-211ENST00000546215 LCE4AQ5TA78 99 aa6.72□□□□□ -1.33
SCARB1-211ENST00000546215 KRTAP4-9Q9BYQ8 210 aa6.71□□□□□ -1.34
SCARB1-211ENST00000546215 LOC100996750A0A140TA64 210 aa6.7□□□□□ -1.34
SCARB1-211ENST00000546215 KRTAP5-4Q6L8H1 288 aa6.7□□□□□ -1.34
SCARB1-211ENST00000546215 KRTAP5-5Q701N2 237 aaPredicted RBP6.66□□□□□ -1.34
SCARB1-211ENST00000546215 LCE1DQ5T752 114 aa6.62□□□□□ -1.35
SCARB1-211ENST00000546215 MT4P47944 62 aa6.59□□□□□ -1.35
SCARB1-211ENST00000546215 HMCN1Q96RW7 5635 aa6.54□□□□□ -1.36
SCARB1-211ENST00000546215 KRTAP9-6A8MVA2 160 aa6.53□□□□□ -1.36
SCARB1-211ENST00000546215 KRTAP4-6Q9BYQ5 205 aa6.48□□□□□ -1.37
SCARB1-211ENST00000546215 SYNE1Q8NF91 8797 aaKnown RBP6.37□□□□□ -1.39
SCARB1-211ENST00000546215 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
SCARB1-211ENST00000546215 MT1AP04731 61 aa6.31□□□□□ -1.4
SCARB1-211ENST00000546215 SPRR5A0A1B0GTR4 108 aa6.3□□□□□ -1.4
SCARB1-211ENST00000546215 KRTAP20-2Q3LI61 65 aa6.29□□□□□ -1.4
SCARB1-211ENST00000546215 KRTAP6-1Q3LI64 71 aa6.27□□□□□ -1.41
SCARB1-211ENST00000546215 AHNAK2Q8IVF2 5795 aa6.13□□□□□ -1.43
SCARB1-211ENST00000546215 KRTAP5-3Q6L8H2 238 aa6.1□□□□□ -1.43
SCARB1-211ENST00000546215 GPR98Q8WXG9 6306 aa6.08□□□□□ -1.44
SCARB1-211ENST00000546215 KRTAP9-4Q9BYQ2 154 aa6.07□□□□□ -1.44
SCARB1-211ENST00000546215 KRTAP5-2Q701N4 177 aa5.96□□□□□ -1.46
SCARB1-211ENST00000546215 KRTAP5-10Q6L8G5 202 aa5.93□□□□□ -1.46
SCARB1-211ENST00000546215 KRTAP6-2Q3LI66 62 aa5.89□□□□□ -1.47
SCARB1-211ENST00000546215 MT3P25713 68 aa5.76□□□□□ -1.49
SCARB1-211ENST00000546215 KRTAP4-11Q9BYQ6 195 aa5.63□□□□□ -1.51
SCARB1-211ENST00000546215 KRTAP5-7Q6L8G8 165 aa5.63□□□□□ -1.51
SCARB1-211ENST00000546215 LUZP6Q538Z0 58 aa5.61□□□□□ -1.51
SCARB1-211ENST00000546215 NDUFAF8A1L188 74 aa5.56□□□□□ -1.52
SCARB1-211ENST00000546215 OBSCNQ5VST9 7968 aa5.54□□□□□ -1.52
SCARB1-211ENST00000546215 KRTAP5-8O75690 187 aa5.45□□□□□ -1.54
SCARB1-211ENST00000546215 KRTAP5-1Q6L8H4 278 aa5.27□□□□□ -1.57
SCARB1-211ENST00000546215 H3BS24 57 aa5.25□□□□□ -1.57
SCARB1-211ENST00000546215 LCE1EQ5T753 118 aa5.19□□□□□ -1.58
SCARB1-211ENST00000546215 MUC5ACP98088 5654 aa5.15□□□□□ -1.59
SCARB1-211ENST00000546215 LCE3DQ9BYE3 92 aa5.06□□□□□ -1.6
SCARB1-211ENST00000546215 KRTAP9-9Q9BYP9 154 aa5.05□□□□□ -1.6
SCARB1-211ENST00000546215 A0A0A0MQY5 61 aa5.03□□□□□ -1.6
SCARB1-211ENST00000546215 MUC5BQ9HC84 5762 aaPredicted RBP5□□□□□ -1.61
SCARB1-211ENST00000546215 AHNAKQ09666 5890 aaKnown RBP4.88□□□□□ -1.63
SCARB1-211ENST00000546215 KRTAP4-2Q9BYR5 136 aa4.87□□□□□ -1.63
SCARB1-211ENST00000546215 LCE3EQ5T5B0 92 aa4.83□□□□□ -1.64
SCARB1-211ENST00000546215 LCE1BQ5T7P3 118 aa4.83□□□□□ -1.64
SCARB1-211ENST00000546215 LCE1CQ5T751 118 aa4.82□□□□□ -1.64
SCARB1-211ENST00000546215 KRTAP4-12Q9BQ66 201 aa4.73□□□□□ -1.65
SCARB1-211ENST00000546215 INE1O15225 51 aa4.69□□□□□ -1.66
SCARB1-211ENST00000546215 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.45□□□□□ -1.7
SCARB1-211ENST00000546215 KRTAP5-11Q6L8G4 156 aa4.32□□□□□ -1.72
SCARB1-211ENST00000546215 KRTAP21-2Q3LI59 83 aa4.14□□□□□ -1.75
SCARB1-211ENST00000546215 LCE1FQ5T754 118 aa4.09□□□□□ -1.75
SCARB1-211ENST00000546215 PRM1P04553 51 aa3.88□□□□□ -1.79
SCARB1-211ENST00000546215 PHGR1C9JFL3 82 aa3.72□□□□□ -1.81
SCARB1-211ENST00000546215 KRTAP4-4Q9BYR3 166 aa3.71□□□□□ -1.82
SCARB1-211ENST00000546215 MUC19Q7Z5P9 8384 aa3.38□□□□□ -1.87
SCARB1-211ENST00000546215 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
SCARB1-211ENST00000546215 MUC16Q8WXI7 14507 aa2.4□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms