RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 KTN1-AS1Q86SY8 53 aa5.95□□□□□ -1.46
PRPF40A-212ENST00000545856 LCE1DQ5T752 114 aa5.94□□□□□ -1.46
PRPF40A-212ENST00000545856 KRTAP19-5Q3LI72 72 aa5.93□□□□□ -1.46
PRPF40A-212ENST00000545856 KRTAP12-3P60328 96 aa5.92□□□□□ -1.46
PRPF40A-212ENST00000545856 MT1EP04732 61 aa5.9□□□□□ -1.47
PRPF40A-212ENST00000545856 MUC12Q9UKN1 5478 aa5.88□□□□□ -1.47
PRPF40A-212ENST00000545856 KRTAP4-7Q9BYR0 210 aa5.85□□□□□ -1.47
PRPF40A-212ENST00000545856 MDN1Q9NU22 5596 aa5.84□□□□□ -1.47
PRPF40A-212ENST00000545856 LCE4AQ5TA78 99 aa5.77□□□□□ -1.49
PRPF40A-212ENST00000545856 PRAC1Q96KF2 57 aa5.77□□□□□ -1.49
PRPF40A-212ENST00000545856 LCE1AQ5T7P2 110 aa5.76□□□□□ -1.49
PRPF40A-212ENST00000545856 KRTAP19-3Q7Z4W3 81 aa5.76□□□□□ -1.49
PRPF40A-212ENST00000545856 SPRR2EP22531 72 aa5.74□□□□□ -1.49
PRPF40A-212ENST00000545856 SPRR2BP35325 72 aa5.74□□□□□ -1.49
PRPF40A-212ENST00000545856 SPRR2AP35326 72 aa5.74□□□□□ -1.49
PRPF40A-212ENST00000545856 KRTAP15-1Q3LI76 137 aa5.74□□□□□ -1.49
PRPF40A-212ENST00000545856 KRTAP4-9Q9BYQ8 210 aa5.73□□□□□ -1.49
PRPF40A-212ENST00000545856 MT1GP13640 62 aa5.72□□□□□ -1.49
PRPF40A-212ENST00000545856 MT1LQ93083 61 aa5.72□□□□□ -1.49
PRPF40A-212ENST00000545856 NEBP20929 6669 aa5.72□□□□□ -1.49
PRPF40A-212ENST00000545856 LCE5AQ5TCM9 118 aa5.68□□□□□ -1.5
PRPF40A-212ENST00000545856 MT1MQ8N339 61 aa5.56□□□□□ -1.52
PRPF40A-212ENST00000545856 KRTAP4-2Q9BYR5 136 aa5.56□□□□□ -1.52
PRPF40A-212ENST00000545856 SPRR2DP22532 72 aa5.55□□□□□ -1.52
PRPF40A-212ENST00000545856 SVIPQ8NHG7 77 aa5.55□□□□□ -1.52
PRPF40A-212ENST00000545856 KRTAP4-11Q9BYQ6 195 aa5.54□□□□□ -1.52
PRPF40A-212ENST00000545856 LCE3CQ5T5A8 94 aa5.5□□□□□ -1.53
PRPF40A-212ENST00000545856 KRTAP2-3P0C7H8 128 aa5.41□□□□□ -1.54
PRPF40A-212ENST00000545856 KRTAP2-4Q9BYR9 128 aa5.41□□□□□ -1.54
PRPF40A-212ENST00000545856 KRTAP20-1Q3LI63 56 aa5.36□□□□□ -1.55
PRPF40A-212ENST00000545856 DSTQ03001 7570 aaKnown RBP5.31□□□□□ -1.56
PRPF40A-212ENST00000545856 KRTAP4-3Q9BYR4 195 aa5.28□□□□□ -1.56
PRPF40A-212ENST00000545856 KRTAP2-2Q9BYT5 123 aa5.28□□□□□ -1.56
PRPF40A-212ENST00000545856 KRTAP2-1Q9BYU5 128 aa5.28□□□□□ -1.56
PRPF40A-212ENST00000545856 SPRR5A0A1B0GTR4 108 aa5.24□□□□□ -1.57
PRPF40A-212ENST00000545856 KRTAP9-6A8MVA2 160 aa5.09□□□□□ -1.59
PRPF40A-212ENST00000545856 KRTAP5-5Q701N2 237 aaPredicted RBP5.07□□□□□ -1.6
PRPF40A-212ENST00000545856 KRTAP5-4Q6L8H1 288 aa5.02□□□□□ -1.61
PRPF40A-212ENST00000545856 LUZP6Q538Z0 58 aa4.95□□□□□ -1.62
PRPF40A-212ENST00000545856 MT1AP04731 61 aa4.91□□□□□ -1.62
PRPF40A-212ENST00000545856 KRTAP5-3Q6L8H2 238 aa4.91□□□□□ -1.62
PRPF40A-212ENST00000545856 KRTAP12-4P60329 112 aa4.84□□□□□ -1.63
PRPF40A-212ENST00000545856 SYNE1Q8NF91 8797 aaKnown RBP4.81□□□□□ -1.64
PRPF40A-212ENST00000545856 HMCN1Q96RW7 5635 aa4.78□□□□□ -1.64
PRPF40A-212ENST00000545856 KRTAP6-1Q3LI64 71 aa4.78□□□□□ -1.64
PRPF40A-212ENST00000545856 MT4P47944 62 aa4.75□□□□□ -1.65
PRPF40A-212ENST00000545856 KRTAP20-2Q3LI61 65 aa4.66□□□□□ -1.66
PRPF40A-212ENST00000545856 GPR98Q8WXG9 6306 aa4.59□□□□□ -1.68
PRPF40A-212ENST00000545856 KRTAP5-2Q701N4 177 aa4.51□□□□□ -1.69
PRPF40A-212ENST00000545856 MT3P25713 68 aa4.49□□□□□ -1.69
PRPF40A-212ENST00000545856 NDUFAF8A1L188 74 aa4.46□□□□□ -1.7
PRPF40A-212ENST00000545856 KRTAP6-2Q3LI66 62 aa4.45□□□□□ -1.7
PRPF40A-212ENST00000545856 AHNAK2Q8IVF2 5795 aa4.37□□□□□ -1.71
PRPF40A-212ENST00000545856 KRTAP5-10Q6L8G5 202 aa4.19□□□□□ -1.74
PRPF40A-212ENST00000545856 LCE3DQ9BYE3 92 aa4.1□□□□□ -1.75
PRPF40A-212ENST00000545856 KRTAP5-7Q6L8G8 165 aa4.06□□□□□ -1.76
PRPF40A-212ENST00000545856 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
PRPF40A-212ENST00000545856 LCE1EQ5T753 118 aa4.03□□□□□ -1.76
PRPF40A-212ENST00000545856 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
PRPF40A-212ENST00000545856 LCE3EQ5T5B0 92 aa3.96□□□□□ -1.78
PRPF40A-212ENST00000545856 KRTAP5-8O75690 187 aa3.95□□□□□ -1.78
PRPF40A-212ENST00000545856 MUC5ACP98088 5654 aa3.9□□□□□ -1.79
PRPF40A-212ENST00000545856 KRTAP5-1Q6L8H4 278 aa3.89□□□□□ -1.79
PRPF40A-212ENST00000545856 INE1O15225 51 aa3.85□□□□□ -1.79
PRPF40A-212ENST00000545856 LCE1CQ5T751 118 aa3.72□□□□□ -1.81
PRPF40A-212ENST00000545856 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
PRPF40A-212ENST00000545856 KRTAP5-11Q6L8G4 156 aa3.69□□□□□ -1.82
PRPF40A-212ENST00000545856 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.67□□□□□ -1.82
PRPF40A-212ENST00000545856 MUC5BQ9HC84 5762 aaPredicted RBP3.58□□□□□ -1.84
PRPF40A-212ENST00000545856 AHNAKQ09666 5890 aaKnown RBP3.5□□□□□ -1.85
PRPF40A-212ENST00000545856 PRM1P04553 51 aa3.24□□□□□ -1.89
PRPF40A-212ENST00000545856 LCE1FQ5T754 118 aa3.18□□□□□ -1.9
PRPF40A-212ENST00000545856 KRTAP21-2Q3LI59 83 aa3.16□□□□□ -1.9
PRPF40A-212ENST00000545856 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
PRPF40A-212ENST00000545856 PHGR1C9JFL3 82 aa2.82□□□□□ -1.96
PRPF40A-212ENST00000545856 MUC19Q7Z5P9 8384 aa2.46□□□□□ -2.01
PRPF40A-212ENST00000545856 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
PRPF40A-212ENST00000545856 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 83.9 ms