RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SPINT4Q6UDR6 99 aa4.7□□□□□ -1.66
USP28-212ENST00000544750 TMEM258P61165 79 aa4.69□□□□□ -1.66
USP28-212ENST00000544750 MT1GP13640 62 aa4.68□□□□□ -1.66
USP28-212ENST00000544750 A8MU10 97 aa4.67□□□□□ -1.66
USP28-212ENST00000544750 KRTAP5-4Q6L8H1 288 aa4.67□□□□□ -1.66
USP28-212ENST00000544750 KRTAP5-7Q6L8G8 165 aa4.66□□□□□ -1.66
USP28-212ENST00000544750 LINC01558Q9Y6Z2 57 aa4.66□□□□□ -1.66
USP28-212ENST00000544750 SMIM26A0A096LP01 95 aa4.65□□□□□ -1.67
USP28-212ENST00000544750 MT1MQ8N339 61 aa4.61□□□□□ -1.67
USP28-212ENST00000544750 PRR15LQ9BU68 103 aa4.61□□□□□ -1.67
USP28-212ENST00000544750 PP632Q6XCG6 107 aa4.6□□□□□ -1.67
USP28-212ENST00000544750 KRTAP4-2Q9BYR5 136 aa4.59□□□□□ -1.67
USP28-212ENST00000544750 KRTAP19-5Q3LI72 72 aa4.58□□□□□ -1.68
USP28-212ENST00000544750 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
USP28-212ENST00000544750 KRTAP4-11Q9BYQ6 195 aa4.56□□□□□ -1.68
USP28-212ENST00000544750 MT1LQ93083 61 aa4.53□□□□□ -1.68
USP28-212ENST00000544750 C10orf95Q9H7T3 257 aa4.53□□□□□ -1.68
USP28-212ENST00000544750 KRTAP4-3Q9BYR4 195 aa4.52□□□□□ -1.69
USP28-212ENST00000544750 UQCR11O14957 56 aa4.48□□□□□ -1.69
USP28-212ENST00000544750 TNP1P09430 55 aa4.44□□□□□ -1.7
USP28-212ENST00000544750 LCE3AQ5TA76 89 aa4.44□□□□□ -1.7
USP28-212ENST00000544750 KRTAP20-2Q3LI61 65 aa4.41□□□□□ -1.7
USP28-212ENST00000544750 MIR22HGQ0VDD5 57 aa4.4□□□□□ -1.71
USP28-212ENST00000544750 Q1T7F1 81 aa4.4□□□□□ -1.71
USP28-212ENST00000544750 SPRR5A0A1B0GTR4 108 aa4.38□□□□□ -1.71
USP28-212ENST00000544750 PSPHP1O15172 72 aa4.38□□□□□ -1.71
USP28-212ENST00000544750 V9GYY9 64 aa4.38□□□□□ -1.71
USP28-212ENST00000544750 KRTAP5-5Q701N2 237 aaPredicted RBP4.3□□□□□ -1.72
USP28-212ENST00000544750 PCP4P48539 62 aa4.27□□□□□ -1.73
USP28-212ENST00000544750 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
USP28-212ENST00000544750 RPS28P62857 69 aaKnown RBP4.24□□□□□ -1.73
USP28-212ENST00000544750 KRTAP25-1Q3LHN0 102 aa4.24□□□□□ -1.73
USP28-212ENST00000544750 K7ERS5 55 aa4.23□□□□□ -1.73
USP28-212ENST00000544750 A6NED7 52 aa4.21□□□□□ -1.74
USP28-212ENST00000544750 KRTAP12-4P60329 112 aa4.21□□□□□ -1.74
USP28-212ENST00000544750 SYNE1Q8NF91 8797 aaKnown RBP4.19□□□□□ -1.74
USP28-212ENST00000544750 KRTAP23-1A1A580 65 aa4.13□□□□□ -1.75
USP28-212ENST00000544750 CDC42SE1Q9NRR8 79 aa4.07□□□□□ -1.76
USP28-212ENST00000544750 MUC5BQ9HC84 5762 aaPredicted RBP4.02□□□□□ -1.77
USP28-212ENST00000544750 KRTAP5-8O75690 187 aa4.02□□□□□ -1.77
USP28-212ENST00000544750 ROMO1P60602 79 aa4.02□□□□□ -1.77
USP28-212ENST00000544750 KRTAP5-2Q701N4 177 aa4.02□□□□□ -1.77
USP28-212ENST00000544750 AHNAKQ09666 5890 aaKnown RBP4□□□□□ -1.77
USP28-212ENST00000544750 KRTAP15-1Q3LI76 137 aa4□□□□□ -1.77
USP28-212ENST00000544750 MUC5ACP98088 5654 aa4□□□□□ -1.77
USP28-212ENST00000544750 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
USP28-212ENST00000544750 KRTAP6-1Q3LI64 71 aa3.85□□□□□ -1.79
USP28-212ENST00000544750 MT1AP04731 61 aa3.84□□□□□ -1.79
USP28-212ENST00000544750 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
USP28-212ENST00000544750 KRTAP9-6A8MVA2 160 aa3.76□□□□□ -1.81
USP28-212ENST00000544750 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
USP28-212ENST00000544750 BRK1Q8WUW1 75 aa3.72□□□□□ -1.81
USP28-212ENST00000544750 KRTAP5-1Q6L8H4 278 aa3.68□□□□□ -1.82
USP28-212ENST00000544750 MT3P25713 68 aa3.51□□□□□ -1.85
USP28-212ENST00000544750 PMAIP1Q13794 54 aa3.48□□□□□ -1.85
USP28-212ENST00000544750 PRAC1Q96KF2 57 aa3.39□□□□□ -1.87
USP28-212ENST00000544750 LCE1EQ5T753 118 aa3.34□□□□□ -1.87
USP28-212ENST00000544750 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
USP28-212ENST00000544750 SVIPQ8NHG7 77 aa3.24□□□□□ -1.89
USP28-212ENST00000544750 KTN1-AS1Q86SY8 53 aa3.15□□□□□ -1.91
USP28-212ENST00000544750 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
USP28-212ENST00000544750 A0A0A0MQY5 61 aa3.12□□□□□ -1.91
USP28-212ENST00000544750 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
USP28-212ENST00000544750 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
USP28-212ENST00000544750 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.04□□□□□ -1.92
USP28-212ENST00000544750 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
USP28-212ENST00000544750 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
USP28-212ENST00000544750 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
USP28-212ENST00000544750 LUZP6Q538Z0 58 aa2.76□□□□□ -1.97
USP28-212ENST00000544750 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
USP28-212ENST00000544750 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
USP28-212ENST00000544750 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
USP28-212ENST00000544750 KRTAP4-4Q9BYR3 166 aa2.53□□□□□ -2
USP28-212ENST00000544750 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
USP28-212ENST00000544750 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
USP28-212ENST00000544750 PRM1P04553 51 aa2.08□□□□□ -2.08
USP28-212ENST00000544750 INE1O15225 51 aa1.84□□□□□ -2.11
USP28-212ENST00000544750 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 26.9 ms