RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 KRTAP19-3Q7Z4W3 81 aa10.7□□□□□ -0.7
CCM2-219ENST00000544363 KRTAP19-4Q3LI73 84 aa10.69□□□□□ -0.7
CCM2-219ENST00000544363 LCE3CQ5T5A8 94 aa10.62□□□□□ -0.71
CCM2-219ENST00000544363 MT1GP13640 62 aa10.59□□□□□ -0.71
CCM2-219ENST00000544363 LCE1AQ5T7P2 110 aa10.55□□□□□ -0.72
CCM2-219ENST00000544363 LCE5AQ5TCM9 118 aa10.54□□□□□ -0.72
CCM2-219ENST00000544363 SPRR2EP22531 72 aa10.48□□□□□ -0.73
CCM2-219ENST00000544363 SPRR2BP35325 72 aa10.48□□□□□ -0.73
CCM2-219ENST00000544363 SPRR2AP35326 72 aa10.48□□□□□ -0.73
CCM2-219ENST00000544363 MDN1Q9NU22 5596 aa10.48□□□□□ -0.73
CCM2-219ENST00000544363 KRTAP4-7Q9BYR0 210 aa10.47□□□□□ -0.73
CCM2-219ENST00000544363 MT1MQ8N339 61 aa10.46□□□□□ -0.74
CCM2-219ENST00000544363 SPRR5A0A1B0GTR4 108 aa10.45□□□□□ -0.74
CCM2-219ENST00000544363 NEBP20929 6669 aa10.36□□□□□ -0.75
CCM2-219ENST00000544363 KRTAP4-3Q9BYR4 195 aa10.24□□□□□ -0.77
CCM2-219ENST00000544363 SPRR2DP22532 72 aa10.11□□□□□ -0.79
CCM2-219ENST00000544363 KRTAP9-6A8MVA2 160 aa10.04□□□□□ -0.8
CCM2-219ENST00000544363 LUZP6Q538Z0 58 aa10□□□□□ -0.81
CCM2-219ENST00000544363 KRTAP20-1Q3LI63 56 aa9.96□□□□□ -0.81
CCM2-219ENST00000544363 LOC100996750A0A140TA64 210 aa9.85□□□□□ -0.83
CCM2-219ENST00000544363 DSTQ03001 7570 aaKnown RBP9.85□□□□□ -0.83
CCM2-219ENST00000544363 KRTAP2-3P0C7H8 128 aa9.74□□□□□ -0.85
CCM2-219ENST00000544363 KRTAP2-4Q9BYR9 128 aa9.74□□□□□ -0.85
CCM2-219ENST00000544363 LCE3BQ5TA77 95 aa9.71□□□□□ -0.85
CCM2-219ENST00000544363 NDUFAF8A1L188 74 aa9.64□□□□□ -0.87
CCM2-219ENST00000544363 KRTAP5-5Q701N2 237 aaPredicted RBP9.45□□□□□ -0.9
CCM2-219ENST00000544363 KRTAP2-2Q9BYT5 123 aa9.44□□□□□ -0.9
CCM2-219ENST00000544363 KRTAP2-1Q9BYU5 128 aa9.44□□□□□ -0.9
CCM2-219ENST00000544363 MT1AP04731 61 aa9.23□□□□□ -0.93
CCM2-219ENST00000544363 KRTAP6-1Q3LI64 71 aa9.14□□□□□ -0.95
CCM2-219ENST00000544363 KRTAP5-4Q6L8H1 288 aa9.11□□□□□ -0.95
CCM2-219ENST00000544363 LCE4AQ5TA78 99 aa8.98□□□□□ -0.97
CCM2-219ENST00000544363 SYNE1Q8NF91 8797 aaKnown RBP8.92□□□□□ -0.98
CCM2-219ENST00000544363 KRTAP12-4P60329 112 aa8.82□□□□□ -1
CCM2-219ENST00000544363 KRTAP9-4Q9BYQ2 154 aa8.79□□□□□ -1
CCM2-219ENST00000544363 MT4P47944 62 aa8.76□□□□□ -1.01
CCM2-219ENST00000544363 KRTAP4-9Q9BYQ8 210 aa8.72□□□□□ -1.01
CCM2-219ENST00000544363 KRTAP4-6Q9BYQ5 205 aa8.69□□□□□ -1.02
CCM2-219ENST00000544363 LCE1DQ5T752 114 aa8.65□□□□□ -1.03
CCM2-219ENST00000544363 KRTAP20-2Q3LI61 65 aa8.51□□□□□ -1.05
CCM2-219ENST00000544363 HMCN1Q96RW7 5635 aa8.47□□□□□ -1.05
CCM2-219ENST00000544363 KRTAP6-2Q3LI66 62 aa8.44□□□□□ -1.06
CCM2-219ENST00000544363 A0A0A0MQY5 61 aa8.4□□□□□ -1.06
CCM2-219ENST00000544363 MT3P25713 68 aa8.37□□□□□ -1.07
CCM2-219ENST00000544363 GPR98Q8WXG9 6306 aa8.3□□□□□ -1.08
CCM2-219ENST00000544363 KRTAP5-2Q701N4 177 aa8.23□□□□□ -1.09
CCM2-219ENST00000544363 KRTAP5-3Q6L8H2 238 aa8.22□□□□□ -1.09
CCM2-219ENST00000544363 H3BS24 57 aa8.07□□□□□ -1.12
CCM2-219ENST00000544363 LCE3DQ9BYE3 92 aa7.95□□□□□ -1.14
CCM2-219ENST00000544363 INE1O15225 51 aa7.94□□□□□ -1.14
CCM2-219ENST00000544363 AHNAK2Q8IVF2 5795 aa7.93□□□□□ -1.14
CCM2-219ENST00000544363 KRTAP5-10Q6L8G5 202 aa7.77□□□□□ -1.17
CCM2-219ENST00000544363 LCE3EQ5T5B0 92 aa7.7□□□□□ -1.18
CCM2-219ENST00000544363 OBSCNQ5VST9 7968 aa7.63□□□□□ -1.19
CCM2-219ENST00000544363 KRTAP5-7Q6L8G8 165 aa7.46□□□□□ -1.21
CCM2-219ENST00000544363 KRTAP4-11Q9BYQ6 195 aa7.42□□□□□ -1.22
CCM2-219ENST00000544363 LCE1EQ5T753 118 aa7.31□□□□□ -1.24
CCM2-219ENST00000544363 KRTAP5-8O75690 187 aa7.15□□□□□ -1.27
CCM2-219ENST00000544363 KRTAP5-1Q6L8H4 278 aa7.14□□□□□ -1.27
CCM2-219ENST00000544363 LCE1BQ5T7P3 118 aa6.85□□□□□ -1.31
CCM2-219ENST00000544363 MUC5ACP98088 5654 aa6.83□□□□□ -1.32
CCM2-219ENST00000544363 KRTAP4-2Q9BYR5 136 aa6.82□□□□□ -1.32
CCM2-219ENST00000544363 LCE1CQ5T751 118 aa6.81□□□□□ -1.32
CCM2-219ENST00000544363 PRM1P04553 51 aa6.64□□□□□ -1.35
CCM2-219ENST00000544363 KRTAP9-9Q9BYP9 154 aa6.55□□□□□ -1.36
CCM2-219ENST00000544363 AHNAKQ09666 5890 aaKnown RBP6.49□□□□□ -1.37
CCM2-219ENST00000544363 MUC5BQ9HC84 5762 aaPredicted RBP6.49□□□□□ -1.37
CCM2-219ENST00000544363 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.36□□□□□ -1.39
CCM2-219ENST00000544363 KRTAP5-11Q6L8G4 156 aa6.02□□□□□ -1.45
CCM2-219ENST00000544363 KRTAP21-2Q3LI59 83 aa5.99□□□□□ -1.45
CCM2-219ENST00000544363 KRTAP4-12Q9BQ66 201 aa5.7□□□□□ -1.5
CCM2-219ENST00000544363 LCE1FQ5T754 118 aa5.48□□□□□ -1.53
CCM2-219ENST00000544363 KRTAP4-4Q9BYR3 166 aa5.33□□□□□ -1.56
CCM2-219ENST00000544363 PHGR1C9JFL3 82 aa5.17□□□□□ -1.58
CCM2-219ENST00000544363 MUC19Q7Z5P9 8384 aa4.56□□□□□ -1.68
CCM2-219ENST00000544363 KRTAP21-1Q3LI58 79 aa4.03□□□□□ -1.77
CCM2-219ENST00000544363 MUC16Q8WXI7 14507 aa3.37□□□□□ -1.87
Retrieved 77 of 20,778 RNA–protein pairs in 12.9 ms