RNA–Protein interactions for RNA: ENST00000542032.1

LEMD3-204, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-204ENST00000542032 TNP1P09430 55 aa0.53□□□□□ -2.32
LEMD3-204ENST00000542032 FAT1Q14517 4588 aa0.53□□□□□ -2.32
LEMD3-204ENST00000542032 MYCBP2O75592 4640 aa0.53□□□□□ -2.32
LEMD3-204ENST00000542032 PKHD1L1Q86WI1 4243 aa0.53□□□□□ -2.32
LEMD3-204ENST00000542032 HYDINQ4G0P3 5121 aa0.53□□□□□ -2.33
LEMD3-204ENST00000542032 HSPG2P98160 4391 aa0.52□□□□□ -2.33
LEMD3-204ENST00000542032 SACSQ9NZJ4 4579 aa0.52□□□□□ -2.33
LEMD3-204ENST00000542032 HTN3P15516 51 aa0.52□□□□□ -2.33
LEMD3-204ENST00000542032 SPRR2DP22532 72 aa0.52□□□□□ -2.33
LEMD3-204ENST00000542032 SYNE1Q8NF91 8797 aaKnown RBP0.52□□□□□ -2.33
LEMD3-204ENST00000542032 LRP1Q07954 4544 aaKnown RBP0.52□□□□□ -2.33
LEMD3-204ENST00000542032 AHNAKQ09666 5890 aaKnown RBP0.51□□□□□ -2.33
LEMD3-204ENST00000542032 DYNC1H1Q14204 4646 aaKnown RBP0.51□□□□□ -2.33
LEMD3-204ENST00000542032 KMT2CQ8NEZ4 4911 aaKnown RBP0.5□□□□□ -2.33
LEMD3-204ENST00000542032 APOBP04114 4563 aaKnown RBP0.5□□□□□ -2.33
LEMD3-204ENST00000542032 FAT3Q8TDW7 4589 aa0.5□□□□□ -2.33
LEMD3-204ENST00000542032 LRP2P98164 4655 aa0.5□□□□□ -2.33
LEMD3-204ENST00000542032 RYR3Q15413 4870 aa0.49□□□□□ -2.33
LEMD3-204ENST00000542032 MUC5BQ9HC84 5762 aaPredicted RBP0.49□□□□□ -2.33
LEMD3-204ENST00000542032 LPAP08519 4548 aa0.48□□□□□ -2.33
LEMD3-204ENST00000542032 KIAA1109Q2LD37 5005 aa0.48□□□□□ -2.33
LEMD3-204ENST00000542032 RYR2Q92736 4967 aa0.48□□□□□ -2.33
LEMD3-204ENST00000542032 RYR1P21817 5038 aa0.48□□□□□ -2.33
LEMD3-204ENST00000542032 SPRR2BP35325 72 aa0.47□□□□□ -2.33
LEMD3-204ENST00000542032 RPS29P62273 56 aaKnown RBP0.47□□□□□ -2.33
LEMD3-204ENST00000542032 MDN1Q9NU22 5596 aa0.46□□□□□ -2.34
LEMD3-204ENST00000542032 KRTAP19-2Q3LHN2 52 aa0.46□□□□□ -2.34
LEMD3-204ENST00000542032 ABCA13Q86UQ4 5058 aa0.45□□□□□ -2.34
LEMD3-204ENST00000542032 EPPK1P58107 5090 aaKnown RBP0.45□□□□□ -2.34
LEMD3-204ENST00000542032 MT1HL1P0DM35 61 aa0.45□□□□□ -2.34
LEMD3-204ENST00000542032 MUC17Q685J3 4493 aa0.45□□□□□ -2.34
LEMD3-204ENST00000542032 HERC2O95714 4834 aa0.44□□□□□ -2.34
LEMD3-204ENST00000542032 SMR3BP02814 79 aaPredicted RBP0.44□□□□□ -2.34
LEMD3-204ENST00000542032 MUC2Q02817 5179 aa0.44□□□□□ -2.34
LEMD3-204ENST00000542032 FAT4Q6V0I7 4981 aa0.44□□□□□ -2.34
LEMD3-204ENST00000542032 FLGP20930 4061 aaPredicted RBP0.43□□□□□ -2.34
LEMD3-204ENST00000542032 HERC1Q15751 4861 aa0.42□□□□□ -2.34
LEMD3-204ENST00000542032 BIRC6Q9NR09 4857 aa0.42□□□□□ -2.34
LEMD3-204ENST00000542032 PCLOQ9Y6V0 5065 aa0.42□□□□□ -2.34
LEMD3-204ENST00000542032 KRTAP6-2Q3LI66 62 aa0.41□□□□□ -2.34
LEMD3-204ENST00000542032 HMCN2Q8NDA2 5059 aa0.41□□□□□ -2.34
LEMD3-204ENST00000542032 MT1AP04731 61 aa0.39□□□□□ -2.35
LEMD3-204ENST00000542032 SPRR2AP35326 72 aa0.39□□□□□ -2.35
LEMD3-204ENST00000542032 SPRR2GQ9BYE4 73 aa0.39□□□□□ -2.35
LEMD3-204ENST00000542032 UBR4Q5T4S7 5183 aa0.39□□□□□ -2.35
LEMD3-204ENST00000542032 RNF213Q63HN8 5207 aa0.38□□□□□ -2.35
LEMD3-204ENST00000542032 KRTAP19-8Q3LI54 63 aa0.38□□□□□ -2.35
LEMD3-204ENST00000542032 MT1BP07438 61 aa0.37□□□□□ -2.35
LEMD3-204ENST00000542032 MT1HP80294 61 aa0.37□□□□□ -2.35
LEMD3-204ENST00000542032 MUC5ACP98088 5654 aa0.36□□□□□ -2.35
LEMD3-204ENST00000542032 MT2AP02795 61 aa0.36□□□□□ -2.35
LEMD3-204ENST00000542032 MT1FP04733 61 aa0.36□□□□□ -2.35
LEMD3-204ENST00000542032 MT1XP80297 61 aa0.36□□□□□ -2.35
LEMD3-204ENST00000542032 KRTAP8-1Q8IUC2 63 aa0.36□□□□□ -2.35
LEMD3-204ENST00000542032 USH2AO75445 5202 aa0.35□□□□□ -2.35
LEMD3-204ENST00000542032 PHGR1C9JFL3 82 aa0.35□□□□□ -2.35
LEMD3-204ENST00000542032 KMT2DO14686 5537 aa0.34□□□□□ -2.36
LEMD3-204ENST00000542032 SSPOA2VEC9 5147 aa0.33□□□□□ -2.36
LEMD3-204ENST00000542032 KRTAP19-7Q3SYF9 63 aa0.33□□□□□ -2.36
LEMD3-204ENST00000542032 SPRR2EP22531 72 aa0.32□□□□□ -2.36
LEMD3-204ENST00000542032 KRTAP19-5Q3LI72 72 aa0.32□□□□□ -2.36
LEMD3-204ENST00000542032 MT1EP04732 61 aa0.31□□□□□ -2.36
LEMD3-204ENST00000542032 MT1LQ93083 61 aa0.31□□□□□ -2.36
LEMD3-204ENST00000542032 MUC12Q9UKN1 5478 aa0.3□□□□□ -2.36
LEMD3-204ENST00000542032 KRTAP19-6Q3LI70 58 aa0.3□□□□□ -2.36
LEMD3-204ENST00000542032 SPRR2FQ96RM1 72 aa0.3□□□□□ -2.36
LEMD3-204ENST00000542032 MT1GP13640 62 aa0.29□□□□□ -2.36
LEMD3-204ENST00000542032 MT1MQ8N339 61 aa0.28□□□□□ -2.36
LEMD3-204ENST00000542032 FSIP2Q5CZC0 6907 aa0.28□□□□□ -2.36
LEMD3-204ENST00000542032 DSTQ03001 7570 aaKnown RBP0.27□□□□□ -2.37
LEMD3-204ENST00000542032 KRTAP6-1Q3LI64 71 aa0.26□□□□□ -2.37
LEMD3-204ENST00000542032 MACF1Q9UPN3 7388 aaKnown RBP0.25□□□□□ -2.37
LEMD3-204ENST00000542032 SYNE2Q8WXH0 6885 aaKnown RBP0.24□□□□□ -2.37
LEMD3-204ENST00000542032 GPR98Q8WXG9 6306 aa0.21□□□□□ -2.38
LEMD3-204ENST00000542032 NEBP20929 6669 aa0.2□□□□□ -2.38
LEMD3-204ENST00000542032 KRTAP20-2Q3LI61 65 aa0.2□□□□□ -2.38
LEMD3-204ENST00000542032 KRTAP20-1Q3LI63 56 aa0.19□□□□□ -2.38
LEMD3-204ENST00000542032 MT4P47944 62 aa0.17□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 49.3 ms