RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 KRTAP8-1Q8IUC2 63 aa4□□□□□ -1.77
LMO3-227ENST00000541764 MT1XP80297 61 aa3.99□□□□□ -1.77
LMO3-227ENST00000541764 LCE3AQ5TA76 89 aa3.99□□□□□ -1.77
LMO3-227ENST00000541764 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
LMO3-227ENST00000541764 KRTAP5-9P26371 169 aa3.96□□□□□ -1.78
LMO3-227ENST00000541764 KRTAP5-1Q6L8H4 278 aa3.96□□□□□ -1.78
LMO3-227ENST00000541764 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
LMO3-227ENST00000541764 KRTAP5-4Q6L8H1 288 aa3.91□□□□□ -1.78
LMO3-227ENST00000541764 KRTAP10-12P60413 245 aa3.89□□□□□ -1.79
LMO3-227ENST00000541764 PRO2289Q9P1D8 64 aa3.89□□□□□ -1.79
LMO3-227ENST00000541764 KRTAP4-4Q9BYR3 166 aa3.85□□□□□ -1.79
LMO3-227ENST00000541764 KRTAP12-3P60328 96 aa3.84□□□□□ -1.8
LMO3-227ENST00000541764 KRTAP2-2Q9BYT5 123 aa3.79□□□□□ -1.8
LMO3-227ENST00000541764 KRTAP19-5Q3LI72 72 aa3.67□□□□□ -1.82
LMO3-227ENST00000541764 LCE3CQ5T5A8 94 aa3.62□□□□□ -1.83
LMO3-227ENST00000541764 MT3P25713 68 aa3.61□□□□□ -1.83
LMO3-227ENST00000541764 USH2AO75445 5202 aa3.61□□□□□ -1.83
LMO3-227ENST00000541764 KRTAP19-7Q3SYF9 63 aa3.57□□□□□ -1.84
LMO3-227ENST00000541764 INE1O15225 51 aa3.54□□□□□ -1.84
LMO3-227ENST00000541764 KRTAP19-6Q3LI70 58 aa3.53□□□□□ -1.84
LMO3-227ENST00000541764 SSPOA2VEC9 5147 aa3.49□□□□□ -1.85
LMO3-227ENST00000541764 MT1EP04732 61 aa3.47□□□□□ -1.85
LMO3-227ENST00000541764 MT1LQ93083 61 aa3.47□□□□□ -1.85
LMO3-227ENST00000541764 KRTAP9-6A8MVA2 160 aa3.44□□□□□ -1.86
LMO3-227ENST00000541764 KMT2DO14686 5537 aa3.43□□□□□ -1.86
LMO3-227ENST00000541764 OBSCNQ5VST9 7968 aa3.41□□□□□ -1.86
LMO3-227ENST00000541764 KRTAP2-3P0C7H8 128 aa3.4□□□□□ -1.87
LMO3-227ENST00000541764 KRTAP2-4Q9BYR9 128 aa3.4□□□□□ -1.87
LMO3-227ENST00000541764 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
LMO3-227ENST00000541764 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
LMO3-227ENST00000541764 KRTAP5-2Q701N4 177 aa3.33□□□□□ -1.88
LMO3-227ENST00000541764 FSIP2Q5CZC0 6907 aa3.31□□□□□ -1.88
LMO3-227ENST00000541764 MT1GP13640 62 aa3.28□□□□□ -1.88
LMO3-227ENST00000541764 KRTAP19-3Q7Z4W3 81 aa3.27□□□□□ -1.89
LMO3-227ENST00000541764 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
LMO3-227ENST00000541764 MT1MQ8N339 61 aa3.25□□□□□ -1.89
LMO3-227ENST00000541764 CRCT1Q9UGL9 99 aa3.22□□□□□ -1.89
LMO3-227ENST00000541764 FCGBPQ9Y6R7 5405 aaPredicted RBP3.2□□□□□ -1.9
LMO3-227ENST00000541764 SPRR2FQ96RM1 72 aa3.09□□□□□ -1.91
LMO3-227ENST00000541764 MUC12Q9UKN1 5478 aa3.08□□□□□ -1.92
LMO3-227ENST00000541764 GPR98Q8WXG9 6306 aa3.04□□□□□ -1.92
LMO3-227ENST00000541764 MACF1Q9UPN3 7388 aaKnown RBP2.95□□□□□ -1.94
LMO3-227ENST00000541764 MT1AP04731 61 aa2.95□□□□□ -1.94
LMO3-227ENST00000541764 SYNE2Q8WXH0 6885 aaKnown RBP2.94□□□□□ -1.94
LMO3-227ENST00000541764 KRTAP5-5Q701N2 237 aaPredicted RBP2.93□□□□□ -1.94
LMO3-227ENST00000541764 KRTAP12-4P60329 112 aa2.9□□□□□ -1.95
LMO3-227ENST00000541764 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
LMO3-227ENST00000541764 KRTAP5-8O75690 187 aa2.84□□□□□ -1.95
LMO3-227ENST00000541764 SPRR2EP22531 72 aa2.84□□□□□ -1.95
LMO3-227ENST00000541764 SPRR2BP35325 72 aa2.84□□□□□ -1.95
LMO3-227ENST00000541764 SPRR2AP35326 72 aa2.84□□□□□ -1.95
LMO3-227ENST00000541764 NEBP20929 6669 aa2.83□□□□□ -1.96
LMO3-227ENST00000541764 MDN1Q9NU22 5596 aa2.82□□□□□ -1.96
LMO3-227ENST00000541764 DSTQ03001 7570 aaKnown RBP2.8□□□□□ -1.96
LMO3-227ENST00000541764 KRTAP6-3Q3LI67 103 aa2.79□□□□□ -1.96
LMO3-227ENST00000541764 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
LMO3-227ENST00000541764 LCE3EQ5T5B0 92 aa2.77□□□□□ -1.97
LMO3-227ENST00000541764 SPRR2DP22532 72 aa2.73□□□□□ -1.97
LMO3-227ENST00000541764 SYNE1Q8NF91 8797 aaKnown RBP2.71□□□□□ -1.98
LMO3-227ENST00000541764 KRTAP20-1Q3LI63 56 aa2.67□□□□□ -1.98
LMO3-227ENST00000541764 KRTAP6-2Q3LI66 62 aa2.59□□□□□ -1.99
LMO3-227ENST00000541764 PRM1P04553 51 aa2.53□□□□□ -2
LMO3-227ENST00000541764 LCE1CQ5T751 118 aa2.53□□□□□ -2
LMO3-227ENST00000541764 LCE1BQ5T7P3 118 aa2.53□□□□□ -2
LMO3-227ENST00000541764 AHNAK2Q8IVF2 5795 aa2.5□□□□□ -2.01
LMO3-227ENST00000541764 KRTAP20-2Q3LI61 65 aa2.41□□□□□ -2.02
LMO3-227ENST00000541764 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
LMO3-227ENST00000541764 MT4P47944 62 aa2.33□□□□□ -2.04
LMO3-227ENST00000541764 MUC5BQ9HC84 5762 aaPredicted RBP2.3□□□□□ -2.04
LMO3-227ENST00000541764 HMCN1Q96RW7 5635 aa2.25□□□□□ -2.05
LMO3-227ENST00000541764 KRTAP5-7Q6L8G8 165 aa2.19□□□□□ -2.06
LMO3-227ENST00000541764 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
LMO3-227ENST00000541764 MUC5ACP98088 5654 aa2.15□□□□□ -2.06
LMO3-227ENST00000541764 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
LMO3-227ENST00000541764 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
LMO3-227ENST00000541764 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
LMO3-227ENST00000541764 PHGR1C9JFL3 82 aa1.55□□□□□ -2.16
LMO3-227ENST00000541764 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 62.3 ms