RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 KRTAP2-4Q9BYR9 128 aa7.06□□□□□ -1.28
TNFRSF1A-213ENST00000540022 KRTAP19-5Q3LI72 72 aa7.05□□□□□ -1.28
TNFRSF1A-213ENST00000540022 PP632Q6XCG6 107 aa6.97□□□□□ -1.29
TNFRSF1A-213ENST00000540022 MT1EP04732 61 aa6.96□□□□□ -1.3
TNFRSF1A-213ENST00000540022 KRTAP12-3P60328 96 aa6.93□□□□□ -1.3
TNFRSF1A-213ENST00000540022 SPRR2DP22532 72 aa6.91□□□□□ -1.3
TNFRSF1A-213ENST00000540022 PRAC1Q96KF2 57 aa6.87□□□□□ -1.31
TNFRSF1A-213ENST00000540022 KRTAP2-2Q9BYT5 123 aa6.84□□□□□ -1.31
TNFRSF1A-213ENST00000540022 KRTAP2-1Q9BYU5 128 aa6.84□□□□□ -1.31
TNFRSF1A-213ENST00000540022 KTN1-AS1Q86SY8 53 aa6.82□□□□□ -1.32
TNFRSF1A-213ENST00000540022 MT1LQ93083 61 aa6.76□□□□□ -1.33
TNFRSF1A-213ENST00000540022 KRTAP19-3Q7Z4W3 81 aa6.76□□□□□ -1.33
TNFRSF1A-213ENST00000540022 LCE3BQ5TA77 95 aa6.73□□□□□ -1.33
TNFRSF1A-213ENST00000540022 KRTAP15-1Q3LI76 137 aa6.7□□□□□ -1.34
TNFRSF1A-213ENST00000540022 LCE5AQ5TCM9 118 aa6.69□□□□□ -1.34
TNFRSF1A-213ENST00000540022 MT1GP13640 62 aa6.66□□□□□ -1.34
TNFRSF1A-213ENST00000540022 MT1MQ8N339 61 aa6.57□□□□□ -1.36
TNFRSF1A-213ENST00000540022 DSTQ03001 7570 aaKnown RBP6.55□□□□□ -1.36
TNFRSF1A-213ENST00000540022 KRTAP4-7Q9BYR0 210 aa6.51□□□□□ -1.37
TNFRSF1A-213ENST00000540022 KRTAP19-4Q3LI73 84 aa6.5□□□□□ -1.37
TNFRSF1A-213ENST00000540022 LOC100996750A0A140TA64 210 aa6.47□□□□□ -1.37
TNFRSF1A-213ENST00000540022 KRTAP4-6Q9BYQ5 205 aa6.47□□□□□ -1.37
TNFRSF1A-213ENST00000540022 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
TNFRSF1A-213ENST00000540022 KRTAP4-3Q9BYR4 195 aa6.44□□□□□ -1.38
TNFRSF1A-213ENST00000540022 KRTAP4-9Q9BYQ8 210 aa6.27□□□□□ -1.41
TNFRSF1A-213ENST00000540022 LCE1DQ5T752 114 aa6.14□□□□□ -1.43
TNFRSF1A-213ENST00000540022 KRTAP9-6A8MVA2 160 aa6.11□□□□□ -1.43
TNFRSF1A-213ENST00000540022 LCE4AQ5TA78 99 aa6.11□□□□□ -1.43
TNFRSF1A-213ENST00000540022 SPRR5A0A1B0GTR4 108 aa6.05□□□□□ -1.44
TNFRSF1A-213ENST00000540022 MT4P47944 62 aa6.05□□□□□ -1.44
TNFRSF1A-213ENST00000540022 HMCN1Q96RW7 5635 aa6.04□□□□□ -1.44
TNFRSF1A-213ENST00000540022 KRTAP5-4Q6L8H1 288 aa6.04□□□□□ -1.44
TNFRSF1A-213ENST00000540022 GPR98Q8WXG9 6306 aa5.99□□□□□ -1.45
TNFRSF1A-213ENST00000540022 KRTAP5-5Q701N2 237 aaPredicted RBP5.97□□□□□ -1.45
TNFRSF1A-213ENST00000540022 KRTAP4-12Q9BQ66 201 aa5.84□□□□□ -1.48
TNFRSF1A-213ENST00000540022 AHNAK2Q8IVF2 5795 aa5.81□□□□□ -1.48
TNFRSF1A-213ENST00000540022 H3BS24 57 aa5.79□□□□□ -1.48
TNFRSF1A-213ENST00000540022 MT1AP04731 61 aa5.74□□□□□ -1.49
TNFRSF1A-213ENST00000540022 KRTAP6-1Q3LI64 71 aa5.7□□□□□ -1.5
TNFRSF1A-213ENST00000540022 KRTAP20-2Q3LI61 65 aa5.69□□□□□ -1.5
TNFRSF1A-213ENST00000540022 KRTAP5-10Q6L8G5 202 aa5.69□□□□□ -1.5
TNFRSF1A-213ENST00000540022 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
TNFRSF1A-213ENST00000540022 KRTAP12-4P60329 112 aa5.62□□□□□ -1.51
TNFRSF1A-213ENST00000540022 LUZP6Q538Z0 58 aa5.61□□□□□ -1.51
TNFRSF1A-213ENST00000540022 KRTAP9-9Q9BYP9 154 aa5.58□□□□□ -1.52
TNFRSF1A-213ENST00000540022 KRTAP9-4Q9BYQ2 154 aa5.58□□□□□ -1.52
TNFRSF1A-213ENST00000540022 KRTAP5-3Q6L8H2 238 aa5.57□□□□□ -1.52
TNFRSF1A-213ENST00000540022 KRTAP5-7Q6L8G8 165 aa5.45□□□□□ -1.54
TNFRSF1A-213ENST00000540022 KRTAP6-2Q3LI66 62 aa5.31□□□□□ -1.56
TNFRSF1A-213ENST00000540022 KRTAP5-2Q701N4 177 aa5.3□□□□□ -1.56
TNFRSF1A-213ENST00000540022 NDUFAF8A1L188 74 aa5.23□□□□□ -1.57
TNFRSF1A-213ENST00000540022 MT3P25713 68 aa5.22□□□□□ -1.57
TNFRSF1A-213ENST00000540022 KRTAP4-11Q9BYQ6 195 aa5.18□□□□□ -1.58
TNFRSF1A-213ENST00000540022 KRTAP4-2Q9BYR5 136 aa5.04□□□□□ -1.6
TNFRSF1A-213ENST00000540022 OBSCNQ5VST9 7968 aa5.04□□□□□ -1.6
TNFRSF1A-213ENST00000540022 KRTAP5-8O75690 187 aa5.02□□□□□ -1.61
TNFRSF1A-213ENST00000540022 MUC5BQ9HC84 5762 aaPredicted RBP4.78□□□□□ -1.64
TNFRSF1A-213ENST00000540022 LCE3DQ9BYE3 92 aa4.77□□□□□ -1.65
TNFRSF1A-213ENST00000540022 KRTAP5-1Q6L8H4 278 aa4.75□□□□□ -1.65
TNFRSF1A-213ENST00000540022 MUC5ACP98088 5654 aa4.71□□□□□ -1.66
TNFRSF1A-213ENST00000540022 AHNAKQ09666 5890 aaKnown RBP4.7□□□□□ -1.66
TNFRSF1A-213ENST00000540022 LCE1EQ5T753 118 aa4.62□□□□□ -1.67
TNFRSF1A-213ENST00000540022 LCE3EQ5T5B0 92 aa4.61□□□□□ -1.67
TNFRSF1A-213ENST00000540022 A0A0A0MQY5 61 aa4.55□□□□□ -1.68
TNFRSF1A-213ENST00000540022 LCE1BQ5T7P3 118 aa4.34□□□□□ -1.71
TNFRSF1A-213ENST00000540022 LCE1CQ5T751 118 aa4.3□□□□□ -1.72
TNFRSF1A-213ENST00000540022 INE1O15225 51 aa4.27□□□□□ -1.73
TNFRSF1A-213ENST00000540022 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.99□□□□□ -1.77
TNFRSF1A-213ENST00000540022 PRM1P04553 51 aa3.85□□□□□ -1.79
TNFRSF1A-213ENST00000540022 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
TNFRSF1A-213ENST00000540022 KRTAP21-2Q3LI59 83 aa3.75□□□□□ -1.81
TNFRSF1A-213ENST00000540022 LCE1FQ5T754 118 aa3.7□□□□□ -1.82
TNFRSF1A-213ENST00000540022 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
TNFRSF1A-213ENST00000540022 PHGR1C9JFL3 82 aa3.29□□□□□ -1.88
TNFRSF1A-213ENST00000540022 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
TNFRSF1A-213ENST00000540022 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
TNFRSF1A-213ENST00000540022 MUC16Q8WXI7 14507 aa2.21□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 7.8 ms