RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 KRTAP5-9P26371 169 aa6.35□□□□□ -1.39
COPS3-212ENST00000539941 KMT2DO14686 5537 aa6.34□□□□□ -1.39
COPS3-212ENST00000539941 MDN1Q9NU22 5596 aa6.33□□□□□ -1.4
COPS3-212ENST00000539941 KRTAP19-5Q3LI72 72 aa6.3□□□□□ -1.4
COPS3-212ENST00000539941 KRTAP19-7Q3SYF9 63 aa6.22□□□□□ -1.41
COPS3-212ENST00000539941 KRTAP20-1Q3LI63 56 aa6.15□□□□□ -1.42
COPS3-212ENST00000539941 LOC100996750A0A140TA64 210 aa6.12□□□□□ -1.43
COPS3-212ENST00000539941 MT1EP04732 61 aa6.12□□□□□ -1.43
COPS3-212ENST00000539941 KRTAP4-6Q9BYQ5 205 aa6.12□□□□□ -1.43
COPS3-212ENST00000539941 SPRR2FQ96RM1 72 aa6.11□□□□□ -1.43
COPS3-212ENST00000539941 KRTAP19-4Q3LI73 84 aa6.06□□□□□ -1.44
COPS3-212ENST00000539941 SPRR2EP22531 72 aa6.03□□□□□ -1.44
COPS3-212ENST00000539941 SPRR2BP35325 72 aa6.03□□□□□ -1.44
COPS3-212ENST00000539941 SPRR2AP35326 72 aa6.03□□□□□ -1.44
COPS3-212ENST00000539941 KRTAP2-3P0C7H8 128 aa6.01□□□□□ -1.45
COPS3-212ENST00000539941 KRTAP2-4Q9BYR9 128 aa6.01□□□□□ -1.45
COPS3-212ENST00000539941 MT1LQ93083 61 aa6□□□□□ -1.45
COPS3-212ENST00000539941 LCE1AQ5T7P2 110 aa5.98□□□□□ -1.45
COPS3-212ENST00000539941 LCE3CQ5T5A8 94 aa5.95□□□□□ -1.46
COPS3-212ENST00000539941 KRTAP19-3Q7Z4W3 81 aa5.88□□□□□ -1.47
COPS3-212ENST00000539941 MT1GP13640 62 aa5.85□□□□□ -1.47
COPS3-212ENST00000539941 SPRR2DP22532 72 aa5.82□□□□□ -1.48
COPS3-212ENST00000539941 KRTAP2-2Q9BYT5 123 aa5.82□□□□□ -1.48
COPS3-212ENST00000539941 KRTAP2-1Q9BYU5 128 aa5.82□□□□□ -1.48
COPS3-212ENST00000539941 LCE5AQ5TCM9 118 aa5.77□□□□□ -1.49
COPS3-212ENST00000539941 MT1MQ8N339 61 aa5.75□□□□□ -1.49
COPS3-212ENST00000539941 KRTAP4-7Q9BYR0 210 aa5.75□□□□□ -1.49
COPS3-212ENST00000539941 LCE3BQ5TA77 95 aa5.68□□□□□ -1.5
COPS3-212ENST00000539941 KRTAP9-6A8MVA2 160 aa5.59□□□□□ -1.51
COPS3-212ENST00000539941 KRTAP4-3Q9BYR4 195 aa5.59□□□□□ -1.52
COPS3-212ENST00000539941 DSTQ03001 7570 aaKnown RBP5.55□□□□□ -1.52
COPS3-212ENST00000539941 KRTAP4-9Q9BYQ8 210 aa5.32□□□□□ -1.56
COPS3-212ENST00000539941 KRTAP4-12Q9BQ66 201 aa5.31□□□□□ -1.56
COPS3-212ENST00000539941 GPR98Q8WXG9 6306 aa5.21□□□□□ -1.58
COPS3-212ENST00000539941 KRTAP5-5Q701N2 237 aaPredicted RBP5.2□□□□□ -1.58
COPS3-212ENST00000539941 KRTAP9-9Q9BYP9 154 aa5.2□□□□□ -1.58
COPS3-212ENST00000539941 KRTAP9-4Q9BYQ2 154 aa5.2□□□□□ -1.58
COPS3-212ENST00000539941 LCE1DQ5T752 114 aa5.19□□□□□ -1.58
COPS3-212ENST00000539941 LCE4AQ5TA78 99 aa5.15□□□□□ -1.58
COPS3-212ENST00000539941 HMCN1Q96RW7 5635 aa5.15□□□□□ -1.59
COPS3-212ENST00000539941 MT1AP04731 61 aa5.12□□□□□ -1.59
COPS3-212ENST00000539941 MT4P47944 62 aa5.11□□□□□ -1.59
COPS3-212ENST00000539941 KRTAP5-4Q6L8H1 288 aa5.1□□□□□ -1.59
COPS3-212ENST00000539941 KRTAP6-1Q3LI64 71 aa5.03□□□□□ -1.6
COPS3-212ENST00000539941 KRTAP12-4P60329 112 aa4.98□□□□□ -1.61
COPS3-212ENST00000539941 AHNAK2Q8IVF2 5795 aa4.98□□□□□ -1.61
COPS3-212ENST00000539941 SYNE1Q8NF91 8797 aaKnown RBP4.89□□□□□ -1.63
COPS3-212ENST00000539941 KRTAP5-10Q6L8G5 202 aa4.85□□□□□ -1.63
COPS3-212ENST00000539941 KRTAP20-2Q3LI61 65 aa4.8□□□□□ -1.64
COPS3-212ENST00000539941 KRTAP4-2Q9BYR5 136 aa4.75□□□□□ -1.65
COPS3-212ENST00000539941 KRTAP5-3Q6L8H2 238 aa4.73□□□□□ -1.65
COPS3-212ENST00000539941 KRTAP5-7Q6L8G8 165 aa4.66□□□□□ -1.66
COPS3-212ENST00000539941 KRTAP4-11Q9BYQ6 195 aa4.65□□□□□ -1.66
COPS3-212ENST00000539941 MT3P25713 68 aa4.64□□□□□ -1.67
COPS3-212ENST00000539941 KRTAP6-2Q3LI66 62 aa4.63□□□□□ -1.67
COPS3-212ENST00000539941 KRTAP5-2Q701N4 177 aa4.51□□□□□ -1.69
COPS3-212ENST00000539941 LCE3EQ5T5B0 92 aa4.5□□□□□ -1.69
COPS3-212ENST00000539941 LCE3DQ9BYE3 92 aa4.48□□□□□ -1.69
COPS3-212ENST00000539941 PRM1P04553 51 aa4.45□□□□□ -1.7
COPS3-212ENST00000539941 OBSCNQ5VST9 7968 aa4.26□□□□□ -1.73
COPS3-212ENST00000539941 KRTAP5-8O75690 187 aa4.26□□□□□ -1.73
COPS3-212ENST00000539941 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
COPS3-212ENST00000539941 AHNAKQ09666 5890 aaKnown RBP4.1□□□□□ -1.75
COPS3-212ENST00000539941 MUC5ACP98088 5654 aa4.06□□□□□ -1.76
COPS3-212ENST00000539941 LCE1EQ5T753 118 aa4.04□□□□□ -1.76
COPS3-212ENST00000539941 KRTAP5-1Q6L8H4 278 aa4.01□□□□□ -1.77
COPS3-212ENST00000539941 LCE1CQ5T751 118 aa3.75□□□□□ -1.81
COPS3-212ENST00000539941 LCE1BQ5T7P3 118 aa3.75□□□□□ -1.81
COPS3-212ENST00000539941 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.53□□□□□ -1.84
COPS3-212ENST00000539941 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
COPS3-212ENST00000539941 KRTAP5-11Q6L8G4 156 aa3.31□□□□□ -1.88
COPS3-212ENST00000539941 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
COPS3-212ENST00000539941 KRTAP21-1Q3LI58 79 aa2.97□□□□□ -1.93
COPS3-212ENST00000539941 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
COPS3-212ENST00000539941 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
COPS3-212ENST00000539941 MUC19Q7Z5P9 8384 aa2.62□□□□□ -1.99
COPS3-212ENST00000539941 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 73 ms