RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 A0A1B0GU69 56 aa4.17□□□□□ -1.74
HMGA2-209ENST00000539662 KRTAP12-1P59990 96 aa4.17□□□□□ -1.74
HMGA2-209ENST00000539662 BRK1Q8WUW1 75 aa4.17□□□□□ -1.74
HMGA2-209ENST00000539662 KRTAP20-1Q3LI63 56 aa4.16□□□□□ -1.74
HMGA2-209ENST00000539662 SPINT4Q6UDR6 99 aa4.16□□□□□ -1.74
HMGA2-209ENST00000539662 A8MU10 97 aa4.15□□□□□ -1.75
HMGA2-209ENST00000539662 A6NED7 52 aa4.14□□□□□ -1.75
HMGA2-209ENST00000539662 ATP5EP56381 51 aaPredicted RBP4.12□□□□□ -1.75
HMGA2-209ENST00000539662 TMEM258P61165 79 aa4.12□□□□□ -1.75
HMGA2-209ENST00000539662 KRTAP2-3P0C7H8 128 aa4.07□□□□□ -1.76
HMGA2-209ENST00000539662 KRTAP2-4Q9BYR9 128 aa4.07□□□□□ -1.76
HMGA2-209ENST00000539662 LINC01558Q9Y6Z2 57 aa4.07□□□□□ -1.76
HMGA2-209ENST00000539662 SPRR2DP22532 72 aa4.05□□□□□ -1.76
HMGA2-209ENST00000539662 KRTAP19-7Q3SYF9 63 aa4.05□□□□□ -1.76
HMGA2-209ENST00000539662 KRTAP5-3Q6L8H2 238 aa4.03□□□□□ -1.76
HMGA2-209ENST00000539662 PRR15LQ9BU68 103 aa4.01□□□□□ -1.77
HMGA2-209ENST00000539662 C10orf95Q9H7T3 257 aa4.01□□□□□ -1.77
HMGA2-209ENST00000539662 MT1EP04732 61 aa3.99□□□□□ -1.77
HMGA2-209ENST00000539662 KRTAP19-5Q3LI72 72 aa3.97□□□□□ -1.77
HMGA2-209ENST00000539662 KRTAP2-2Q9BYT5 123 aa3.95□□□□□ -1.78
HMGA2-209ENST00000539662 KRTAP2-1Q9BYU5 128 aa3.95□□□□□ -1.78
HMGA2-209ENST00000539662 UQCR11O14957 56 aa3.91□□□□□ -1.78
HMGA2-209ENST00000539662 LCE3AQ5TA76 89 aa3.91□□□□□ -1.78
HMGA2-209ENST00000539662 KRTAP19-3Q7Z4W3 81 aa3.91□□□□□ -1.78
HMGA2-209ENST00000539662 TNP1P09430 55 aa3.87□□□□□ -1.79
HMGA2-209ENST00000539662 MIR22HGQ0VDD5 57 aa3.86□□□□□ -1.79
HMGA2-209ENST00000539662 Q1T7F1 81 aa3.85□□□□□ -1.79
HMGA2-209ENST00000539662 MT1LQ93083 61 aa3.83□□□□□ -1.8
HMGA2-209ENST00000539662 DSTQ03001 7570 aaKnown RBP3.83□□□□□ -1.8
HMGA2-209ENST00000539662 MT1GP13640 62 aa3.81□□□□□ -1.8
HMGA2-209ENST00000539662 ROMO1P60602 79 aa3.79□□□□□ -1.8
HMGA2-209ENST00000539662 MT1MQ8N339 61 aa3.79□□□□□ -1.8
HMGA2-209ENST00000539662 KRTAP25-1Q3LHN0 102 aa3.77□□□□□ -1.81
HMGA2-209ENST00000539662 KRTAP4-3Q9BYR4 195 aa3.77□□□□□ -1.81
HMGA2-209ENST00000539662 KRTAP12-3P60328 96 aa3.73□□□□□ -1.81
HMGA2-209ENST00000539662 PP632Q6XCG6 107 aa3.72□□□□□ -1.81
HMGA2-209ENST00000539662 GPR98Q8WXG9 6306 aa3.64□□□□□ -1.83
HMGA2-209ENST00000539662 MT4P47944 62 aa3.57□□□□□ -1.84
HMGA2-209ENST00000539662 CDC42SE1Q9NRR8 79 aa3.56□□□□□ -1.84
HMGA2-209ENST00000539662 KRTAP5-4Q6L8H1 288 aa3.55□□□□□ -1.84
HMGA2-209ENST00000539662 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
HMGA2-209ENST00000539662 KRTAP5-5Q701N2 237 aaPredicted RBP3.48□□□□□ -1.85
HMGA2-209ENST00000539662 MT3P25713 68 aa3.46□□□□□ -1.86
HMGA2-209ENST00000539662 LCE3CQ5T5A8 94 aa3.45□□□□□ -1.86
HMGA2-209ENST00000539662 SYNE1Q8NF91 8797 aaKnown RBP3.42□□□□□ -1.86
HMGA2-209ENST00000539662 AHNAK2Q8IVF2 5795 aa3.35□□□□□ -1.87
HMGA2-209ENST00000539662 KRTAP20-2Q3LI61 65 aa3.35□□□□□ -1.87
HMGA2-209ENST00000539662 KRTAP9-6A8MVA2 160 aa3.33□□□□□ -1.88
HMGA2-209ENST00000539662 SPRR5A0A1B0GTR4 108 aa3.29□□□□□ -1.88
HMGA2-209ENST00000539662 KRTAP12-4P60329 112 aa3.28□□□□□ -1.88
HMGA2-209ENST00000539662 KRTAP5-10Q6L8G5 202 aa3.28□□□□□ -1.88
HMGA2-209ENST00000539662 LCE1FQ5T754 118 aa3.27□□□□□ -1.89
HMGA2-209ENST00000539662 KRTAP6-1Q3LI64 71 aa3.26□□□□□ -1.89
HMGA2-209ENST00000539662 MT1AP04731 61 aa3.24□□□□□ -1.89
HMGA2-209ENST00000539662 INE1O15225 51 aa3.14□□□□□ -1.91
HMGA2-209ENST00000539662 KRTAP5-2Q701N4 177 aa3.13□□□□□ -1.91
HMGA2-209ENST00000539662 KRTAP5-7Q6L8G8 165 aa3.11□□□□□ -1.91
HMGA2-209ENST00000539662 KRTAP6-2Q3LI66 62 aa3.08□□□□□ -1.92
HMGA2-209ENST00000539662 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
HMGA2-209ENST00000539662 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
HMGA2-209ENST00000539662 KRTAP5-8O75690 187 aa2.95□□□□□ -1.94
HMGA2-209ENST00000539662 LCE1EQ5T753 118 aa2.93□□□□□ -1.94
HMGA2-209ENST00000539662 OBSCNQ5VST9 7968 aa2.92□□□□□ -1.94
HMGA2-209ENST00000539662 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
HMGA2-209ENST00000539662 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
HMGA2-209ENST00000539662 MUC5ACP98088 5654 aa2.75□□□□□ -1.97
HMGA2-209ENST00000539662 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
HMGA2-209ENST00000539662 MUC5BQ9HC84 5762 aaPredicted RBP2.74□□□□□ -1.97
HMGA2-209ENST00000539662 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
HMGA2-209ENST00000539662 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
HMGA2-209ENST00000539662 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
HMGA2-209ENST00000539662 LCE1CQ5T751 118 aa2.48□□□□□ -2.01
HMGA2-209ENST00000539662 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
HMGA2-209ENST00000539662 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
HMGA2-209ENST00000539662 PRM1P04553 51 aa1.85□□□□□ -2.11
HMGA2-209ENST00000539662 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
HMGA2-209ENST00000539662 KRTAP21-1Q3LI58 79 aa1.39□□□□□ -2.19
HMGA2-209ENST00000539662 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms