RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 ROMO1P60602 79 aa6.1□□□□□ -1.43
RPAIN-206ENST00000539417 PRAC1Q96KF2 57 aa6.09□□□□□ -1.43
RPAIN-206ENST00000539417 SPRR2EP22531 72 aa6.07□□□□□ -1.44
RPAIN-206ENST00000539417 SPRR2BP35325 72 aa6.07□□□□□ -1.44
RPAIN-206ENST00000539417 SPRR2AP35326 72 aa6.07□□□□□ -1.44
RPAIN-206ENST00000539417 LCE1AQ5T7P2 110 aa6.04□□□□□ -1.44
RPAIN-206ENST00000539417 KRTAP4-11Q9BYQ6 195 aa6.03□□□□□ -1.44
RPAIN-206ENST00000539417 KRTAP5-3Q6L8H2 238 aa6□□□□□ -1.45
RPAIN-206ENST00000539417 C10orf95Q9H7T3 257 aa6□□□□□ -1.45
RPAIN-206ENST00000539417 KRTAP25-1Q3LHN0 102 aa5.96□□□□□ -1.46
RPAIN-206ENST00000539417 KRTAP20-1Q3LI63 56 aa5.94□□□□□ -1.46
RPAIN-206ENST00000539417 KRTAP19-7Q3SYF9 63 aa5.94□□□□□ -1.46
RPAIN-206ENST00000539417 MT1EP04732 61 aa5.85□□□□□ -1.47
RPAIN-206ENST00000539417 SPRR2DP22532 72 aa5.85□□□□□ -1.47
RPAIN-206ENST00000539417 KRTAP2-3P0C7H8 128 aa5.83□□□□□ -1.48
RPAIN-206ENST00000539417 KRTAP19-5Q3LI72 72 aa5.83□□□□□ -1.48
RPAIN-206ENST00000539417 KRTAP2-4Q9BYR9 128 aa5.83□□□□□ -1.48
RPAIN-206ENST00000539417 TNP1P09430 55 aa5.83□□□□□ -1.48
RPAIN-206ENST00000539417 KRTAP19-4Q3LI73 84 aa5.82□□□□□ -1.48
RPAIN-206ENST00000539417 LCE3AQ5TA76 89 aa5.82□□□□□ -1.48
RPAIN-206ENST00000539417 LCE5AQ5TCM9 118 aa5.73□□□□□ -1.49
RPAIN-206ENST00000539417 KRTAP19-3Q7Z4W3 81 aa5.73□□□□□ -1.49
RPAIN-206ENST00000539417 DSTQ03001 7570 aaKnown RBP5.69□□□□□ -1.5
RPAIN-206ENST00000539417 KRTAP2-2Q9BYT5 123 aa5.66□□□□□ -1.5
RPAIN-206ENST00000539417 KRTAP2-1Q9BYU5 128 aa5.66□□□□□ -1.5
RPAIN-206ENST00000539417 LCE4AQ5TA78 99 aa5.64□□□□□ -1.51
RPAIN-206ENST00000539417 MT1LQ93083 61 aa5.63□□□□□ -1.51
RPAIN-206ENST00000539417 PP632Q6XCG6 107 aa5.61□□□□□ -1.51
RPAIN-206ENST00000539417 MT1GP13640 62 aa5.59□□□□□ -1.51
RPAIN-206ENST00000539417 MT1MQ8N339 61 aa5.56□□□□□ -1.52
RPAIN-206ENST00000539417 KRTAP23-1A1A580 65 aa5.55□□□□□ -1.52
RPAIN-206ENST00000539417 KRTAP12-3P60328 96 aa5.55□□□□□ -1.52
RPAIN-206ENST00000539417 KRTAP4-3Q9BYR4 195 aa5.5□□□□□ -1.53
RPAIN-206ENST00000539417 KRTAP15-1Q3LI76 137 aa5.32□□□□□ -1.56
RPAIN-206ENST00000539417 KRTAP5-4Q6L8H1 288 aa5.15□□□□□ -1.58
RPAIN-206ENST00000539417 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
RPAIN-206ENST00000539417 MT4P47944 62 aa5.13□□□□□ -1.59
RPAIN-206ENST00000539417 HMCN1Q96RW7 5635 aa5.13□□□□□ -1.59
RPAIN-206ENST00000539417 KRTAP5-5Q701N2 237 aaPredicted RBP5.08□□□□□ -1.6
RPAIN-206ENST00000539417 SPRR5A0A1B0GTR4 108 aa5.01□□□□□ -1.61
RPAIN-206ENST00000539417 LUZP6Q538Z0 58 aa5.01□□□□□ -1.61
RPAIN-206ENST00000539417 NDUFAF8A1L188 74 aa5□□□□□ -1.61
RPAIN-206ENST00000539417 GPR98Q8WXG9 6306 aa4.97□□□□□ -1.61
RPAIN-206ENST00000539417 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.62
RPAIN-206ENST00000539417 KRTAP9-6A8MVA2 160 aa4.94□□□□□ -1.62
RPAIN-206ENST00000539417 AHNAK2Q8IVF2 5795 aa4.88□□□□□ -1.63
RPAIN-206ENST00000539417 KRTAP20-2Q3LI61 65 aa4.85□□□□□ -1.63
RPAIN-206ENST00000539417 KRTAP12-4P60329 112 aa4.81□□□□□ -1.64
RPAIN-206ENST00000539417 KRTAP6-1Q3LI64 71 aa4.78□□□□□ -1.64
RPAIN-206ENST00000539417 MT1AP04731 61 aa4.77□□□□□ -1.65
RPAIN-206ENST00000539417 KRTAP5-10Q6L8G5 202 aa4.67□□□□□ -1.66
RPAIN-206ENST00000539417 KRTAP5-2Q701N4 177 aa4.56□□□□□ -1.68
RPAIN-206ENST00000539417 A0A0A0MQY5 61 aa4.51□□□□□ -1.69
RPAIN-206ENST00000539417 KRTAP6-2Q3LI66 62 aa4.5□□□□□ -1.69
RPAIN-206ENST00000539417 KRTAP5-7Q6L8G8 165 aa4.43□□□□□ -1.7
RPAIN-206ENST00000539417 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
RPAIN-206ENST00000539417 OBSCNQ5VST9 7968 aa4.39□□□□□ -1.71
RPAIN-206ENST00000539417 MT3P25713 68 aa4.32□□□□□ -1.72
RPAIN-206ENST00000539417 KRTAP5-8O75690 187 aa4.24□□□□□ -1.73
RPAIN-206ENST00000539417 INE1O15225 51 aa4.19□□□□□ -1.74
RPAIN-206ENST00000539417 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
RPAIN-206ENST00000539417 KRTAP5-11Q6L8G4 156 aa4.05□□□□□ -1.76
RPAIN-206ENST00000539417 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
RPAIN-206ENST00000539417 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
RPAIN-206ENST00000539417 AHNAKQ09666 5890 aaKnown RBP3.92□□□□□ -1.78
RPAIN-206ENST00000539417 LCE1EQ5T753 118 aa3.9□□□□□ -1.79
RPAIN-206ENST00000539417 LCE3DQ9BYE3 92 aa3.73□□□□□ -1.81
RPAIN-206ENST00000539417 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
RPAIN-206ENST00000539417 LCE1CQ5T751 118 aa3.64□□□□□ -1.83
RPAIN-206ENST00000539417 KRTAP4-4Q9BYR3 166 aa3.64□□□□□ -1.83
RPAIN-206ENST00000539417 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
RPAIN-206ENST00000539417 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
RPAIN-206ENST00000539417 PRM1P04553 51 aa3.17□□□□□ -1.9
RPAIN-206ENST00000539417 KRTAP21-2Q3LI59 83 aa3.15□□□□□ -1.91
RPAIN-206ENST00000539417 PHGR1C9JFL3 82 aa2.84□□□□□ -1.96
RPAIN-206ENST00000539417 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
RPAIN-206ENST00000539417 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
RPAIN-206ENST00000539417 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 98.3 ms