RNA–Protein interactions for RNA: ENST00000538545.6

ACTN1-205, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 2,813 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-205ENST00000538545 MT1LQ93083 61 aa4.98□□□□□ -1.61
ACTN1-205ENST00000538545 CRCT1Q9UGL9 99 aa4.98□□□□□ -1.61
ACTN1-205ENST00000538545 SPRR2FQ96RM1 72 aa4.91□□□□□ -1.62
ACTN1-205ENST00000538545 KRTAP9-6A8MVA2 160 aa4.91□□□□□ -1.62
ACTN1-205ENST00000538545 KRTAP4-3Q9BYR4 195 aa4.9□□□□□ -1.63
ACTN1-205ENST00000538545 MDN1Q9NU22 5596 aa4.89□□□□□ -1.63
ACTN1-205ENST00000538545 KRTAP19-3Q7Z4W3 81 aa4.8□□□□□ -1.64
ACTN1-205ENST00000538545 LOC100996750A0A140TA64 210 aa4.77□□□□□ -1.65
ACTN1-205ENST00000538545 INE1O15225 51 aa4.77□□□□□ -1.65
ACTN1-205ENST00000538545 MT1MQ8N339 61 aa4.75□□□□□ -1.65
ACTN1-205ENST00000538545 MT1GP13640 62 aa4.71□□□□□ -1.66
ACTN1-205ENST00000538545 LCE5AQ5TCM9 118 aa4.68□□□□□ -1.66
ACTN1-205ENST00000538545 KRTAP9-6A0A140TA67 174 aa4.63□□□□□ -1.67
ACTN1-205ENST00000538545 KRTAP5-9P26371 169 aa4.62□□□□□ -1.67
ACTN1-205ENST00000538545 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.61□□□□□ -1.67
ACTN1-205ENST00000538545 LCE1AQ5T7P2 110 aa4.6□□□□□ -1.67
ACTN1-205ENST00000538545 KRTAP19-4Q3LI73 84 aa4.58□□□□□ -1.68
ACTN1-205ENST00000538545 SPRR2EP22531 72 aa4.57□□□□□ -1.68
ACTN1-205ENST00000538545 SPRR2BP35325 72 aa4.57□□□□□ -1.68
ACTN1-205ENST00000538545 SPRR2AP35326 72 aa4.57□□□□□ -1.68
ACTN1-205ENST00000538545 SYNE1Q8NF91 8797 aaKnown RBP4.49□□□□□ -1.69
ACTN1-205ENST00000538545 KRTAP6-3Q3LI67 103 aa4.43□□□□□ -1.7
ACTN1-205ENST00000538545 KRTAP2-3P0C7H8 128 aa4.42□□□□□ -1.7
ACTN1-205ENST00000538545 KRTAP2-4Q9BYR9 128 aa4.42□□□□□ -1.7
ACTN1-205ENST00000538545 KRTAP2-1Q9BYU5 128 aa4.42□□□□□ -1.7
ACTN1-205ENST00000538545 SPRR2DP22532 72 aa4.36□□□□□ -1.71
ACTN1-205ENST00000538545 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
ACTN1-205ENST00000538545 KRTAP6-1Q3LI64 71 aa4.28□□□□□ -1.72
ACTN1-205ENST00000538545 LCE3BQ5TA77 95 aa4.25□□□□□ -1.73
ACTN1-205ENST00000538545 NEBP20929 6669 aa4.24□□□□□ -1.73
ACTN1-205ENST00000538545 OBSCNQ5VST9 7968 aa4.23□□□□□ -1.73
ACTN1-205ENST00000538545 KRTAP5-5Q701N2 237 aaPredicted RBP4.22□□□□□ -1.73
ACTN1-205ENST00000538545 KRTAP4-9Q9BYQ8 210 aa4.17□□□□□ -1.74
ACTN1-205ENST00000538545 MT1AP04731 61 aa4.16□□□□□ -1.74
ACTN1-205ENST00000538545 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
ACTN1-205ENST00000538545 MT4P47944 62 aa3.93□□□□□ -1.78
ACTN1-205ENST00000538545 KRTAP4-6Q9BYQ5 205 aa3.91□□□□□ -1.78
ACTN1-205ENST00000538545 KRTAP6-2Q3LI66 62 aa3.9□□□□□ -1.78
ACTN1-205ENST00000538545 KRTAP12-4P60329 112 aa3.89□□□□□ -1.79
ACTN1-205ENST00000538545 KRTAP5-4Q6L8H1 288 aa3.89□□□□□ -1.79
ACTN1-205ENST00000538545 HMCN1Q96RW7 5635 aa3.81□□□□□ -1.8
ACTN1-205ENST00000538545 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
ACTN1-205ENST00000538545 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
ACTN1-205ENST00000538545 KRTAP20-1Q3LI63 56 aa3.76□□□□□ -1.81
ACTN1-205ENST00000538545 MT3P25713 68 aa3.75□□□□□ -1.81
ACTN1-205ENST00000538545 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
ACTN1-205ENST00000538545 KRTAP20-2Q3LI61 65 aa3.71□□□□□ -1.82
ACTN1-205ENST00000538545 LCE4AQ5TA78 99 aa3.71□□□□□ -1.82
ACTN1-205ENST00000538545 LCE3EQ5T5B0 92 aa3.69□□□□□ -1.82
ACTN1-205ENST00000538545 KRTAP5-2Q701N4 177 aa3.55□□□□□ -1.84
ACTN1-205ENST00000538545 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
ACTN1-205ENST00000538545 LCE1EQ5T753 118 aa3.43□□□□□ -1.86
ACTN1-205ENST00000538545 PRM1P04553 51 aa3.41□□□□□ -1.86
ACTN1-205ENST00000538545 LCE1FQ5T754 118 aa3.25□□□□□ -1.89
ACTN1-205ENST00000538545 MUC5ACP98088 5654 aa3.23□□□□□ -1.89
ACTN1-205ENST00000538545 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
ACTN1-205ENST00000538545 KRTAP4-11Q9BYQ6 195 aa3.18□□□□□ -1.9
ACTN1-205ENST00000538545 AHNAK2Q8IVF2 5795 aa3.17□□□□□ -1.9
ACTN1-205ENST00000538545 KRTAP5-1Q6L8H4 278 aa3.13□□□□□ -1.91
ACTN1-205ENST00000538545 KRTAP9-9Q9BYP9 154 aa3.09□□□□□ -1.92
ACTN1-205ENST00000538545 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
ACTN1-205ENST00000538545 KRTAP5-8O75690 187 aa3.05□□□□□ -1.92
ACTN1-205ENST00000538545 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
ACTN1-205ENST00000538545 LCE1CQ5T751 118 aa2.96□□□□□ -1.94
ACTN1-205ENST00000538545 MUC5BQ9HC84 5762 aaPredicted RBP2.88□□□□□ -1.95
ACTN1-205ENST00000538545 GPR98Q8WXG9 6306 aa2.84□□□□□ -1.95
ACTN1-205ENST00000538545 KRTAP5-7Q6L8G8 165 aa2.83□□□□□ -1.96
ACTN1-205ENST00000538545 KRTAP21-2Q3LI59 83 aa2.75□□□□□ -1.97
ACTN1-205ENST00000538545 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.73□□□□□ -1.97
ACTN1-205ENST00000538545 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
ACTN1-205ENST00000538545 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
ACTN1-205ENST00000538545 KRTAP5-11Q6L8G4 156 aa2.58□□□□□ -2
ACTN1-205ENST00000538545 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
ACTN1-205ENST00000538545 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.05
ACTN1-205ENST00000538545 PHGR1C9JFL3 82 aa2.25□□□□□ -2.05
ACTN1-205ENST00000538545 KRTAP21-1Q3LI58 79 aa2.06□□□□□ -2.08
ACTN1-205ENST00000538545 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 9.8 ms