RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 KRTAP15-1Q3LI76 137 aa2.79□□□□□ -1.96
MSH6-209ENST00000538136 KRTAP12-3P60328 96 aa2.79□□□□□ -1.96
MSH6-209ENST00000538136 KRTAP19-6Q3LI70 58 aa2.78□□□□□ -1.96
MSH6-209ENST00000538136 KRTAP19-5Q3LI72 72 aa2.78□□□□□ -1.96
MSH6-209ENST00000538136 SPRR2DP22532 72 aa2.72□□□□□ -1.97
MSH6-209ENST00000538136 PP632Q6XCG6 107 aa2.71□□□□□ -1.98
MSH6-209ENST00000538136 KRTAP4-7Q9BYR0 210 aa2.7□□□□□ -1.98
MSH6-209ENST00000538136 KRTAP23-1A1A580 65 aa2.65□□□□□ -1.98
MSH6-209ENST00000538136 KRTAP4-3Q9BYR4 195 aa2.65□□□□□ -1.99
MSH6-209ENST00000538136 NEBP20929 6669 aa2.61□□□□□ -1.99
MSH6-209ENST00000538136 MT1GP13640 62 aa2.59□□□□□ -1.99
MSH6-209ENST00000538136 MT4P47944 62 aa2.58□□□□□ -2
MSH6-209ENST00000538136 KRTAP4-9Q9BYQ8 210 aa2.55□□□□□ -2
MSH6-209ENST00000538136 KRTAP6-3Q3LI67 103 aa2.55□□□□□ -2
MSH6-209ENST00000538136 MT1EP04732 61 aa2.53□□□□□ -2
MSH6-209ENST00000538136 KRTAP20-1Q3LI63 56 aa2.53□□□□□ -2
MSH6-209ENST00000538136 LCE3BQ5TA77 95 aa2.53□□□□□ -2
MSH6-209ENST00000538136 LOC100996750A0A140TA64 210 aa2.52□□□□□ -2.01
MSH6-209ENST00000538136 KRTAP19-3Q7Z4W3 81 aa2.52□□□□□ -2.01
MSH6-209ENST00000538136 KRTAP19-7Q3SYF9 63 aa2.51□□□□□ -2.01
MSH6-209ENST00000538136 LCE1AQ5T7P2 110 aa2.5□□□□□ -2.01
MSH6-209ENST00000538136 MT1LQ93083 61 aa2.47□□□□□ -2.01
MSH6-209ENST00000538136 LCE3CQ5T5A8 94 aa2.44□□□□□ -2.02
MSH6-209ENST00000538136 MT1MQ8N339 61 aa2.44□□□□□ -2.02
MSH6-209ENST00000538136 KRTAP2-3P0C7H8 128 aa2.4□□□□□ -2.03
MSH6-209ENST00000538136 KRTAP2-4Q9BYR9 128 aa2.4□□□□□ -2.03
MSH6-209ENST00000538136 GPR98Q8WXG9 6306 aa2.38□□□□□ -2.03
MSH6-209ENST00000538136 SPRR5A0A1B0GTR4 108 aa2.36□□□□□ -2.03
MSH6-209ENST00000538136 KRTAP2-2Q9BYT5 123 aa2.35□□□□□ -2.03
MSH6-209ENST00000538136 KRTAP2-1Q9BYU5 128 aa2.35□□□□□ -2.03
MSH6-209ENST00000538136 KRTAP12-4P60329 112 aa2.35□□□□□ -2.03
MSH6-209ENST00000538136 KRTAP5-9P26371 169 aa2.33□□□□□ -2.04
MSH6-209ENST00000538136 LCE5AQ5TCM9 118 aa2.32□□□□□ -2.04
MSH6-209ENST00000538136 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
MSH6-209ENST00000538136 KRTAP4-6Q9BYQ5 205 aa2.24□□□□□ -2.05
MSH6-209ENST00000538136 LCE1DQ5T752 114 aa2.22□□□□□ -2.05
MSH6-209ENST00000538136 KRTAP9-6A8MVA2 160 aa2.22□□□□□ -2.05
MSH6-209ENST00000538136 INE1O15225 51 aa2.22□□□□□ -2.05
MSH6-209ENST00000538136 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
MSH6-209ENST00000538136 HMCN1Q96RW7 5635 aa2.16□□□□□ -2.06
MSH6-209ENST00000538136 KRTAP6-2Q3LI66 62 aa2.13□□□□□ -2.07
MSH6-209ENST00000538136 LCE1BQ5T7P3 118 aa2.12□□□□□ -2.07
MSH6-209ENST00000538136 MUC5ACP98088 5654 aa2.11□□□□□ -2.07
MSH6-209ENST00000538136 MT1AP04731 61 aa2.07□□□□□ -2.08
MSH6-209ENST00000538136 LCE4AQ5TA78 99 aa2.07□□□□□ -2.08
MSH6-209ENST00000538136 MT3P25713 68 aa2.05□□□□□ -2.08
MSH6-209ENST00000538136 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
MSH6-209ENST00000538136 KRTAP19-4Q3LI73 84 aa1.99□□□□□ -2.09
MSH6-209ENST00000538136 LCE3DQ9BYE3 92 aa1.99□□□□□ -2.09
MSH6-209ENST00000538136 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
MSH6-209ENST00000538136 KRTAP9-4Q9BYQ2 154 aa1.96□□□□□ -2.1
MSH6-209ENST00000538136 KRTAP5-3Q6L8H2 238 aa1.9□□□□□ -2.11
MSH6-209ENST00000538136 LCE3EQ5T5B0 92 aa1.88□□□□□ -2.11
MSH6-209ENST00000538136 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
MSH6-209ENST00000538136 KRTAP4-11Q9BYQ6 195 aa1.86□□□□□ -2.11
MSH6-209ENST00000538136 KRTAP5-5Q701N2 237 aaPredicted RBP1.83□□□□□ -2.12
MSH6-209ENST00000538136 KRTAP5-4Q6L8H1 288 aa1.81□□□□□ -2.12
MSH6-209ENST00000538136 KRTAP4-12Q9BQ66 201 aa1.8□□□□□ -2.12
MSH6-209ENST00000538136 KRTAP9-9Q9BYP9 154 aa1.8□□□□□ -2.12
MSH6-209ENST00000538136 KRTAP4-2Q9BYR5 136 aa1.8□□□□□ -2.12
MSH6-209ENST00000538136 KRTAP5-8O75690 187 aa1.75□□□□□ -2.13
MSH6-209ENST00000538136 LCE1FQ5T754 118 aa1.72□□□□□ -2.13
MSH6-209ENST00000538136 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
MSH6-209ENST00000538136 LCE1EQ5T753 118 aa1.72□□□□□ -2.13
MSH6-209ENST00000538136 PRM1P04553 51 aa1.69□□□□□ -2.14
MSH6-209ENST00000538136 AHNAKQ09666 5890 aaKnown RBP1.68□□□□□ -2.14
MSH6-209ENST00000538136 KRTAP4-4Q9BYR3 166 aa1.68□□□□□ -2.14
MSH6-209ENST00000538136 KRTAP5-10Q6L8G5 202 aa1.64□□□□□ -2.15
MSH6-209ENST00000538136 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
MSH6-209ENST00000538136 KRTAP5-1Q6L8H4 278 aa1.51□□□□□ -2.17
MSH6-209ENST00000538136 KRTAP5-7Q6L8G8 165 aa1.47□□□□□ -2.17
MSH6-209ENST00000538136 PHGR1C9JFL3 82 aa1.32□□□□□ -2.2
MSH6-209ENST00000538136 KRTAP21-2Q3LI59 83 aa1.23□□□□□ -2.21
MSH6-209ENST00000538136 KRTAP5-11Q6L8G4 156 aa1.21□□□□□ -2.22
MSH6-209ENST00000538136 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.06□□□□□ -2.24
MSH6-209ENST00000538136 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
MSH6-209ENST00000538136 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 79.8 ms