RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 KRTAP19-3Q7Z4W3 81 aa5.45□□□□□ -1.54
USP28-204ENST00000537642 KRTAP19-5Q3LI72 72 aa5.43□□□□□ -1.54
USP28-204ENST00000537642 UQCR11O14957 56 aa5.41□□□□□ -1.54
USP28-204ENST00000537642 DSTQ03001 7570 aaKnown RBP5.41□□□□□ -1.54
USP28-204ENST00000537642 H3BS24 57 aa5.39□□□□□ -1.55
USP28-204ENST00000537642 C10orf95Q9H7T3 257 aa5.39□□□□□ -1.55
USP28-204ENST00000537642 LOC100996750A0A140TA64 210 aa5.38□□□□□ -1.55
USP28-204ENST00000537642 KRTAP4-6Q9BYQ5 205 aa5.38□□□□□ -1.55
USP28-204ENST00000537642 MIR22HGQ0VDD5 57 aa5.35□□□□□ -1.55
USP28-204ENST00000537642 TNP1P09430 55 aa5.34□□□□□ -1.55
USP28-204ENST00000537642 MT1GP13640 62 aa5.32□□□□□ -1.56
USP28-204ENST00000537642 LCE3AQ5TA76 89 aa5.32□□□□□ -1.56
USP28-204ENST00000537642 MT1LQ93083 61 aa5.27□□□□□ -1.57
USP28-204ENST00000537642 PP632Q6XCG6 107 aa5.25□□□□□ -1.57
USP28-204ENST00000537642 MT1MQ8N339 61 aa5.25□□□□□ -1.57
USP28-204ENST00000537642 KRTAP4-9Q9BYQ8 210 aa5.17□□□□□ -1.58
USP28-204ENST00000537642 KRTAP4-3Q9BYR4 195 aa5.14□□□□□ -1.59
USP28-204ENST00000537642 PRAC1Q96KF2 57 aa5.12□□□□□ -1.59
USP28-204ENST00000537642 KRTAP12-3P60328 96 aa5.11□□□□□ -1.59
USP28-204ENST00000537642 K7ERS5 55 aa5.06□□□□□ -1.6
USP28-204ENST00000537642 LCE1DQ5T752 114 aa5.06□□□□□ -1.6
USP28-204ENST00000537642 KRTAP25-1Q3LHN0 102 aa5.05□□□□□ -1.6
USP28-204ENST00000537642 LCE4AQ5TA78 99 aa5.05□□□□□ -1.6
USP28-204ENST00000537642 KRTAP4-7Q9BYR0 210 aa5.03□□□□□ -1.6
USP28-204ENST00000537642 GPR98Q8WXG9 6306 aa5.02□□□□□ -1.61
USP28-204ENST00000537642 MT4P47944 62 aa5□□□□□ -1.61
USP28-204ENST00000537642 HMCN1Q96RW7 5635 aa4.99□□□□□ -1.61
USP28-204ENST00000537642 KRTAP5-4Q6L8H1 288 aa4.99□□□□□ -1.61
USP28-204ENST00000537642 ROMO1P60602 79 aa4.92□□□□□ -1.62
USP28-204ENST00000537642 KRTAP4-12Q9BQ66 201 aa4.92□□□□□ -1.62
USP28-204ENST00000537642 KRTAP23-1A1A580 65 aa4.86□□□□□ -1.63
USP28-204ENST00000537642 AHNAK2Q8IVF2 5795 aa4.84□□□□□ -1.63
USP28-204ENST00000537642 KRTAP5-5Q701N2 237 aaPredicted RBP4.81□□□□□ -1.64
USP28-204ENST00000537642 KRTAP19-4Q3LI73 84 aa4.8□□□□□ -1.64
USP28-204ENST00000537642 KRTAP15-1Q3LI76 137 aa4.78□□□□□ -1.64
USP28-204ENST00000537642 LCE3CQ5T5A8 94 aa4.71□□□□□ -1.66
USP28-204ENST00000537642 KRTAP9-9Q9BYP9 154 aa4.71□□□□□ -1.66
USP28-204ENST00000537642 KRTAP9-4Q9BYQ2 154 aa4.71□□□□□ -1.66
USP28-204ENST00000537642 KRTAP20-2Q3LI61 65 aa4.7□□□□□ -1.66
USP28-204ENST00000537642 KRTAP5-10Q6L8G5 202 aa4.68□□□□□ -1.66
USP28-204ENST00000537642 SPRR5A0A1B0GTR4 108 aa4.67□□□□□ -1.66
USP28-204ENST00000537642 SYNE1Q8NF91 8797 aaKnown RBP4.66□□□□□ -1.66
USP28-204ENST00000537642 KRTAP12-4P60329 112 aa4.65□□□□□ -1.67
USP28-204ENST00000537642 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
USP28-204ENST00000537642 MT1AP04731 61 aa4.49□□□□□ -1.69
USP28-204ENST00000537642 KRTAP5-7Q6L8G8 165 aa4.49□□□□□ -1.69
USP28-204ENST00000537642 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
USP28-204ENST00000537642 KRTAP6-1Q3LI64 71 aa4.47□□□□□ -1.69
USP28-204ENST00000537642 KRTAP5-2Q701N4 177 aa4.38□□□□□ -1.71
USP28-204ENST00000537642 NDUFAF8A1L188 74 aa4.36□□□□□ -1.71
USP28-204ENST00000537642 KRTAP4-11Q9BYQ6 195 aa4.27□□□□□ -1.73
USP28-204ENST00000537642 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
USP28-204ENST00000537642 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
USP28-204ENST00000537642 LUZP6Q538Z0 58 aa4.19□□□□□ -1.74
USP28-204ENST00000537642 KRTAP5-8O75690 187 aa4.14□□□□□ -1.75
USP28-204ENST00000537642 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
USP28-204ENST00000537642 MT3P25713 68 aa4.09□□□□□ -1.75
USP28-204ENST00000537642 A0A0A0MQY5 61 aa4.06□□□□□ -1.76
USP28-204ENST00000537642 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
USP28-204ENST00000537642 AHNAKQ09666 5890 aaKnown RBP3.95□□□□□ -1.78
USP28-204ENST00000537642 KRTAP5-1Q6L8H4 278 aa3.92□□□□□ -1.78
USP28-204ENST00000537642 MUC5ACP98088 5654 aa3.91□□□□□ -1.78
USP28-204ENST00000537642 INE1O15225 51 aa3.77□□□□□ -1.81
USP28-204ENST00000537642 LCE1EQ5T753 118 aa3.75□□□□□ -1.81
USP28-204ENST00000537642 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.84
USP28-204ENST00000537642 LCE1CQ5T751 118 aa3.48□□□□□ -1.85
USP28-204ENST00000537642 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
USP28-204ENST00000537642 LCE3EQ5T5B0 92 aa3.2□□□□□ -1.9
USP28-204ENST00000537642 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.18□□□□□ -1.9
USP28-204ENST00000537642 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
USP28-204ENST00000537642 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
USP28-204ENST00000537642 KRTAP21-2Q3LI59 83 aa2.94□□□□□ -1.94
USP28-204ENST00000537642 PHGR1C9JFL3 82 aa2.72□□□□□ -1.97
USP28-204ENST00000537642 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
USP28-204ENST00000537642 PRM1P04553 51 aa2.54□□□□□ -2
USP28-204ENST00000537642 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
USP28-204ENST00000537642 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
USP28-204ENST00000537642 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 77.6 ms