RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PRO2289Q9P1D8 64 aa2.9□□□□□ -1.95
USP28-202ENST00000535607 FLGP20930 4061 aaPredicted RBP2.89□□□□□ -1.95
USP28-202ENST00000535607 LCE3AQ5TA76 89 aa2.88□□□□□ -1.95
USP28-202ENST00000535607 MT1HP80294 61 aa2.83□□□□□ -1.96
USP28-202ENST00000535607 FAT4Q6V0I7 4981 aa2.83□□□□□ -1.96
USP28-202ENST00000535607 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
USP28-202ENST00000535607 M0R2T5 61 aa2.79□□□□□ -1.96
USP28-202ENST00000535607 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
USP28-202ENST00000535607 MT2AP02795 61 aa2.69□□□□□ -1.98
USP28-202ENST00000535607 MT1FP04733 61 aa2.66□□□□□ -1.98
USP28-202ENST00000535607 KRTAP10-10P60014 251 aa2.66□□□□□ -1.98
USP28-202ENST00000535607 SPRR2GQ9BYE4 73 aa2.65□□□□□ -1.99
USP28-202ENST00000535607 KRTAP8-1Q8IUC2 63 aa2.64□□□□□ -1.99
USP28-202ENST00000535607 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
USP28-202ENST00000535607 KRTAP5-4Q6L8H1 288 aa2.61□□□□□ -1.99
USP28-202ENST00000535607 KRTAP12-3P60328 96 aa2.57□□□□□ -2
USP28-202ENST00000535607 KRTAP19-8Q3LI54 63 aa2.57□□□□□ -2
USP28-202ENST00000535607 KRTAP5-9P26371 169 aa2.54□□□□□ -2
USP28-202ENST00000535607 KRTAP5-5Q701N2 237 aaPredicted RBP2.53□□□□□ -2
USP28-202ENST00000535607 OBSCNQ5VST9 7968 aa2.52□□□□□ -2.01
USP28-202ENST00000535607 MT1BP07438 61 aa2.51□□□□□ -2.01
USP28-202ENST00000535607 KRTAP4-3Q9BYR4 195 aa2.46□□□□□ -2.02
USP28-202ENST00000535607 USH2AO75445 5202 aa2.46□□□□□ -2.02
USP28-202ENST00000535607 KRTAP19-6Q3LI70 58 aa2.45□□□□□ -2.02
USP28-202ENST00000535607 SSPOA2VEC9 5147 aa2.44□□□□□ -2.02
USP28-202ENST00000535607 LCE1CQ5T751 118 aa2.44□□□□□ -2.02
USP28-202ENST00000535607 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
USP28-202ENST00000535607 MT1XP80297 61 aa2.42□□□□□ -2.02
USP28-202ENST00000535607 CRCT1Q9UGL9 99 aa2.41□□□□□ -2.02
USP28-202ENST00000535607 FSIP2Q5CZC0 6907 aa2.39□□□□□ -2.03
USP28-202ENST00000535607 KRTAP2-3P0C7H8 128 aa2.32□□□□□ -2.04
USP28-202ENST00000535607 KRTAP19-5Q3LI72 72 aa2.32□□□□□ -2.04
USP28-202ENST00000535607 KRTAP2-4Q9BYR9 128 aa2.32□□□□□ -2.04
USP28-202ENST00000535607 KRTAP2-1Q9BYU5 128 aa2.32□□□□□ -2.04
USP28-202ENST00000535607 FCGBPQ9Y6R7 5405 aaPredicted RBP2.32□□□□□ -2.04
USP28-202ENST00000535607 MACF1Q9UPN3 7388 aaKnown RBP2.25□□□□□ -2.05
USP28-202ENST00000535607 KRTAP6-3Q3LI67 103 aa2.17□□□□□ -2.06
USP28-202ENST00000535607 KMT2DO14686 5537 aa2.17□□□□□ -2.06
USP28-202ENST00000535607 KRTAP19-7Q3SYF9 63 aa2.15□□□□□ -2.07
USP28-202ENST00000535607 KRTAP5-2Q701N4 177 aa2.15□□□□□ -2.07
USP28-202ENST00000535607 SPRR2FQ96RM1 72 aa2.15□□□□□ -2.07
USP28-202ENST00000535607 MT1EP04732 61 aa2.14□□□□□ -2.07
USP28-202ENST00000535607 MT1LQ93083 61 aa2.12□□□□□ -2.07
USP28-202ENST00000535607 SYNE2Q8WXH0 6885 aaKnown RBP2.11□□□□□ -2.07
USP28-202ENST00000535607 KRTAP12-4P60329 112 aa2.11□□□□□ -2.07
USP28-202ENST00000535607 KRTAP19-3Q7Z4W3 81 aa2.08□□□□□ -2.08
USP28-202ENST00000535607 MT1GP13640 62 aa2.06□□□□□ -2.08
USP28-202ENST00000535607 SPRR2EP22531 72 aa2.06□□□□□ -2.08
USP28-202ENST00000535607 SPRR2BP35325 72 aa2.06□□□□□ -2.08
USP28-202ENST00000535607 SPRR2AP35326 72 aa2.06□□□□□ -2.08
USP28-202ENST00000535607 MUC12Q9UKN1 5478 aa2.05□□□□□ -2.08
USP28-202ENST00000535607 MDN1Q9NU22 5596 aa2.05□□□□□ -2.08
USP28-202ENST00000535607 MT1AP04731 61 aa2.01□□□□□ -2.09
USP28-202ENST00000535607 MT1MQ8N339 61 aa2.01□□□□□ -2.09
USP28-202ENST00000535607 NEBP20929 6669 aa1.99□□□□□ -2.09
USP28-202ENST00000535607 SPRR2DP22532 72 aa1.99□□□□□ -2.09
USP28-202ENST00000535607 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
USP28-202ENST00000535607 DSTQ03001 7570 aaKnown RBP1.91□□□□□ -2.1
USP28-202ENST00000535607 KRTAP20-1Q3LI63 56 aa1.9□□□□□ -2.11
USP28-202ENST00000535607 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
USP28-202ENST00000535607 PRM1P04553 51 aa1.86□□□□□ -2.11
USP28-202ENST00000535607 KRTAP5-8O75690 187 aa1.82□□□□□ -2.12
USP28-202ENST00000535607 KRTAP6-1Q3LI64 71 aa1.76□□□□□ -2.13
USP28-202ENST00000535607 SYNE1Q8NF91 8797 aaKnown RBP1.74□□□□□ -2.13
USP28-202ENST00000535607 KRTAP6-2Q3LI66 62 aa1.73□□□□□ -2.13
USP28-202ENST00000535607 MT4P47944 62 aa1.69□□□□□ -2.14
USP28-202ENST00000535607 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
USP28-202ENST00000535607 KRTAP20-2Q3LI61 65 aa1.68□□□□□ -2.14
USP28-202ENST00000535607 KRTAP21-2Q3LI59 83 aa1.67□□□□□ -2.14
USP28-202ENST00000535607 AHNAK2Q8IVF2 5795 aa1.51□□□□□ -2.17
USP28-202ENST00000535607 KRTAP5-10Q6L8G5 202 aa1.49□□□□□ -2.17
USP28-202ENST00000535607 GPR98Q8WXG9 6306 aa1.44□□□□□ -2.18
USP28-202ENST00000535607 MUC5ACP98088 5654 aa1.32□□□□□ -2.2
USP28-202ENST00000535607 MUC5BQ9HC84 5762 aaPredicted RBP1.23□□□□□ -2.21
USP28-202ENST00000535607 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
USP28-202ENST00000535607 AHNAKQ09666 5890 aaKnown RBP1.16□□□□□ -2.22
USP28-202ENST00000535607 PHGR1C9JFL3 82 aa1.03□□□□□ -2.24
USP28-202ENST00000535607 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 8.1 ms