RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 KRTAP4-7Q9BYR0 210 aa1.78□□□□□ -2.12
USH1C-210ENST00000534556 TMEM258P61165 79 aa1.76□□□□□ -2.13
USH1C-210ENST00000534556 SPRR5A0A1B0GTR4 108 aa1.75□□□□□ -2.13
USH1C-210ENST00000534556 TNP1P09430 55 aa1.75□□□□□ -2.13
USH1C-210ENST00000534556 LCE1DQ5T752 114 aa1.75□□□□□ -2.13
USH1C-210ENST00000534556 AHNAKQ09666 5890 aaKnown RBP1.73□□□□□ -2.13
USH1C-210ENST00000534556 KRTAP5-7Q6L8G8 165 aa1.73□□□□□ -2.13
USH1C-210ENST00000534556 PRR15LQ9BU68 103 aa1.73□□□□□ -2.13
USH1C-210ENST00000534556 UQCR11O14957 56 aa1.72□□□□□ -2.13
USH1C-210ENST00000534556 KRTAP12-3P60328 96 aa1.72□□□□□ -2.13
USH1C-210ENST00000534556 KRTAP5-4Q6L8H1 288 aa1.72□□□□□ -2.13
USH1C-210ENST00000534556 PP632Q6XCG6 107 aa1.72□□□□□ -2.13
USH1C-210ENST00000534556 MT4P47944 62 aa1.71□□□□□ -2.14
USH1C-210ENST00000534556 PSPHP1O15172 72 aa1.7□□□□□ -2.14
USH1C-210ENST00000534556 MIR22HGQ0VDD5 57 aa1.7□□□□□ -2.14
USH1C-210ENST00000534556 LCE4AQ5TA78 99 aa1.7□□□□□ -2.14
USH1C-210ENST00000534556 KRTAP4-6Q9BYQ5 205 aa1.7□□□□□ -2.14
USH1C-210ENST00000534556 Q1T7F1 81 aa1.69□□□□□ -2.14
USH1C-210ENST00000534556 LOC100996750A0A140TA64 210 aa1.68□□□□□ -2.14
USH1C-210ENST00000534556 KRTAP5-5Q701N2 237 aaPredicted RBP1.67□□□□□ -2.14
USH1C-210ENST00000534556 KRTAP25-1Q3LHN0 102 aa1.66□□□□□ -2.14
USH1C-210ENST00000534556 KRTAP5-3Q6L8H2 238 aa1.66□□□□□ -2.14
USH1C-210ENST00000534556 MUC5ACP98088 5654 aa1.64□□□□□ -2.15
USH1C-210ENST00000534556 SYNE1Q8NF91 8797 aaKnown RBP1.64□□□□□ -2.15
USH1C-210ENST00000534556 MUC5BQ9HC84 5762 aaPredicted RBP1.64□□□□□ -2.15
USH1C-210ENST00000534556 H3BS24 57 aa1.62□□□□□ -2.15
USH1C-210ENST00000534556 KRTAP20-2Q3LI61 65 aa1.62□□□□□ -2.15
USH1C-210ENST00000534556 V9GYY9 64 aa1.62□□□□□ -2.15
USH1C-210ENST00000534556 KRTAP15-1Q3LI76 137 aa1.61□□□□□ -2.15
USH1C-210ENST00000534556 KRTAP23-1A1A580 65 aa1.6□□□□□ -2.15
USH1C-210ENST00000534556 A6NED7 52 aa1.6□□□□□ -2.15
USH1C-210ENST00000534556 KRTAP9-6A8MVA2 160 aa1.59□□□□□ -2.15
USH1C-210ENST00000534556 LCE3CQ5T5A8 94 aa1.59□□□□□ -2.15
USH1C-210ENST00000534556 K7ERS5 55 aa1.58□□□□□ -2.16
USH1C-210ENST00000534556 PCP4P48539 62 aa1.58□□□□□ -2.16
USH1C-210ENST00000534556 RPS28P62857 69 aaKnown RBP1.58□□□□□ -2.16
USH1C-210ENST00000534556 ROMO1P60602 79 aa1.55□□□□□ -2.16
USH1C-210ENST00000534556 KRTAP6-1Q3LI64 71 aa1.55□□□□□ -2.16
USH1C-210ENST00000534556 KRTAP19-4Q3LI73 84 aa1.55□□□□□ -2.16
USH1C-210ENST00000534556 CDC42SE1Q9NRR8 79 aa1.54□□□□□ -2.16
USH1C-210ENST00000534556 KRTAP12-4P60329 112 aa1.53□□□□□ -2.16
USH1C-210ENST00000534556 MT1AP04731 61 aa1.52□□□□□ -2.17
USH1C-210ENST00000534556 KRTAP5-2Q701N4 177 aa1.52□□□□□ -2.17
USH1C-210ENST00000534556 KRTAP9-4Q9BYQ2 154 aa1.47□□□□□ -2.17
USH1C-210ENST00000534556 KRTAP6-2Q3LI66 62 aa1.46□□□□□ -2.18
USH1C-210ENST00000534556 KRTAP4-11Q9BYQ6 195 aa1.46□□□□□ -2.18
USH1C-210ENST00000534556 KRTAP5-8O75690 187 aa1.44□□□□□ -2.18
USH1C-210ENST00000534556 OBSCNQ5VST9 7968 aa1.44□□□□□ -2.18
USH1C-210ENST00000534556 SVIPQ8NHG7 77 aa1.42□□□□□ -2.18
USH1C-210ENST00000534556 KRTAP5-1Q6L8H4 278 aa1.37□□□□□ -2.19
USH1C-210ENST00000534556 BRK1Q8WUW1 75 aa1.37□□□□□ -2.19
USH1C-210ENST00000534556 MT3P25713 68 aa1.36□□□□□ -2.19
USH1C-210ENST00000534556 KRTAP9-9Q9BYP9 154 aa1.36□□□□□ -2.19
USH1C-210ENST00000534556 PRAC1Q96KF2 57 aa1.31□□□□□ -2.2
USH1C-210ENST00000534556 KRTAP4-12Q9BQ66 201 aa1.29□□□□□ -2.2
USH1C-210ENST00000534556 PMAIP1Q13794 54 aa1.28□□□□□ -2.2
USH1C-210ENST00000534556 LCE1EQ5T753 118 aa1.25□□□□□ -2.21
USH1C-210ENST00000534556 KRTAP4-2Q9BYR5 136 aa1.24□□□□□ -2.21
USH1C-210ENST00000534556 A0A0A0MQY5 61 aa1.19□□□□□ -2.22
USH1C-210ENST00000534556 LCE1BQ5T7P3 118 aa1.19□□□□□ -2.22
USH1C-210ENST00000534556 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
USH1C-210ENST00000534556 PRO0628Q9UI54 55 aa1.17□□□□□ -2.22
USH1C-210ENST00000534556 KTN1-AS1Q86SY8 53 aa1.13□□□□□ -2.23
USH1C-210ENST00000534556 LCE3DQ9BYE3 92 aa1.13□□□□□ -2.23
USH1C-210ENST00000534556 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.09□□□□□ -2.23
USH1C-210ENST00000534556 KRTAP5-11Q6L8G4 156 aa1.07□□□□□ -2.24
USH1C-210ENST00000534556 PHGR1C9JFL3 82 aa1.06□□□□□ -2.24
USH1C-210ENST00000534556 LCE3EQ5T5B0 92 aa1.06□□□□□ -2.24
USH1C-210ENST00000534556 KRTAP21-2Q3LI59 83 aa1.03□□□□□ -2.24
USH1C-210ENST00000534556 LCE1FQ5T754 118 aa1□□□□□ -2.25
USH1C-210ENST00000534556 NDUFAF8A1L188 74 aa0.96□□□□□ -2.26
USH1C-210ENST00000534556 LUZP6Q538Z0 58 aa0.96□□□□□ -2.26
USH1C-210ENST00000534556 KRTAP4-4Q9BYR3 166 aa0.95□□□□□ -2.26
USH1C-210ENST00000534556 MUC19Q7Z5P9 8384 aa0.94□□□□□ -2.26
USH1C-210ENST00000534556 PRM1P04553 51 aa0.82□□□□□ -2.28
USH1C-210ENST00000534556 KRTAP21-1Q3LI58 79 aa0.78□□□□□ -2.28
USH1C-210ENST00000534556 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
USH1C-210ENST00000534556 INE1O15225 51 aa0.6□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 81 ms