RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CLLU1Q5K131 121 aa0.73□□□□□ -2.29
CD44-235ENST00000532339 MT-ATP8P03928 68 aa0.72□□□□□ -2.29
CD44-235ENST00000532339 SMIM11BQ8TCY0 68 aa0.72□□□□□ -2.29
CD44-235ENST00000532339 C12orf57Q99622 126 aa0.71□□□□□ -2.3
CD44-235ENST00000532339 SMCO4Q9NRQ5 59 aa0.71□□□□□ -2.3
CD44-235ENST00000532339 CCKP06307 115 aa0.7□□□□□ -2.3
CD44-235ENST00000532339 ADIRFQ15847 76 aa0.68□□□□□ -2.3
CD44-235ENST00000532339 MMP24-AS1A0A0U1RRL7 71 aa0.67□□□□□ -2.3
CD44-235ENST00000532339 KANTRA0A1W2PQU2 76 aa0.66□□□□□ -2.3
CD44-235ENST00000532339 J3QR89 54 aa0.65□□□□□ -2.31
CD44-235ENST00000532339 IFITM1P13164 125 aa0.65□□□□□ -2.31
CD44-235ENST00000532339 COPS9Q8WXC6 57 aa0.65□□□□□ -2.31
CD44-235ENST00000532339 VPS25Q9BRG1 176 aa0.65□□□□□ -2.31
CD44-235ENST00000532339 PLNP26678 52 aa0.64□□□□□ -2.31
CD44-235ENST00000532339 PMCHL1Q16048 86 aa0.64□□□□□ -2.31
CD44-235ENST00000532339 IFI27L1Q96BM0 104 aa0.64□□□□□ -2.31
CD44-235ENST00000532339 K7ERU9 68 aa0.63□□□□□ -2.31
CD44-235ENST00000532339 SNCGO76070 127 aa0.63□□□□□ -2.31
CD44-235ENST00000532339 BVES-AS1Q5T3Y7 98 aa0.63□□□□□ -2.31
CD44-235ENST00000532339 S100ZQ8WXG8 99 aa0.63□□□□□ -2.31
CD44-235ENST00000532339 LINC01545Q5VT33 79 aa0.62□□□□□ -2.31
CD44-235ENST00000532339 SPATA8Q6RVD6 105 aa0.62□□□□□ -2.31
CD44-235ENST00000532339 CCDC179H3BU77 68 aa0.61□□□□□ -2.31
CD44-235ENST00000532339 SEC11CQ9BY50 192 aa0.58□□□□□ -2.32
CD44-235ENST00000532339 ACYP1P07311 99 aa0.57□□□□□ -2.32
CD44-235ENST00000532339 C18orf32Q8TCD1 76 aa0.57□□□□□ -2.32
CD44-235ENST00000532339 H0YGX0 51 aa0.56□□□□□ -2.32
CD44-235ENST00000532339 K7EP34 96 aa0.56□□□□□ -2.32
CD44-235ENST00000532339 PMCHL2Q9BQD1 86 aa0.55□□□□□ -2.32
CD44-235ENST00000532339 CYP4F30PQ9H0H9 118 aa0.55□□□□□ -2.32
CD44-235ENST00000532339 TNP1P09430 55 aa0.54□□□□□ -2.32
CD44-235ENST00000532339 LEPROTL1O95214 131 aa0.53□□□□□ -2.32
CD44-235ENST00000532339 S100PP25815 95 aa0.52□□□□□ -2.33
CD44-235ENST00000532339 PEA15Q15121 130 aa0.51□□□□□ -2.33
CD44-235ENST00000532339 HIGD1BQ9P298 99 aa0.51□□□□□ -2.33
CD44-235ENST00000532339 NREPQ16612 68 aa0.5□□□□□ -2.33
CD44-235ENST00000532339 TRAV22A0A0B4J277 110 aa0.49□□□□□ -2.33
CD44-235ENST00000532339 TP53AIP1Q9HCN2 124 aa0.48□□□□□ -2.33
CD44-235ENST00000532339 SPTSSBQ8NFR3 76 aa0.47□□□□□ -2.33
CD44-235ENST00000532339 PRR15LQ9BU68 103 aa0.45□□□□□ -2.34
CD44-235ENST00000532339 ACYP2P14621 99 aa0.42□□□□□ -2.34
CD44-235ENST00000532339 KRTDAPP60985 99 aa0.42□□□□□ -2.34
CD44-235ENST00000532339 SYS1-DBNDD2H3BUS1 97 aa0.41□□□□□ -2.34
CD44-235ENST00000532339 SERP1Q9Y6X1 66 aa0.41□□□□□ -2.34
CD44-235ENST00000532339 A0A1B0GV90 55 aa0.35□□□□□ -2.35
CD44-235ENST00000532339 PRO1854Q9UHT4 67 aa0.35□□□□□ -2.35
CD44-235ENST00000532339 ATOX1O00244 68 aa0.34□□□□□ -2.36
CD44-235ENST00000532339 DLEU1O43261 78 aa0.33□□□□□ -2.36
CD44-235ENST00000532339 COX6CP09669 75 aa0.33□□□□□ -2.36
CD44-235ENST00000532339 H0Y9P7 68 aa0.3□□□□□ -2.36
CD44-235ENST00000532339 SMIM6P0DI80 62 aa0.3□□□□□ -2.36
CD44-235ENST00000532339 SPCS1Q9Y6A9 102 aa0.29□□□□□ -2.36
CD44-235ENST00000532339 TMEM218A2RU14 115 aa0.28□□□□□ -2.36
CD44-235ENST00000532339 ATXN8Q156A1 80 aa0.23□□□□□ -2.37
CD44-235ENST00000532339 CHKB-CPT1BH3BT56 60 aa0.22□□□□□ -2.37
CD44-235ENST00000532339 H7BZZ5 65 aa0.22□□□□□ -2.37
CD44-235ENST00000532339 VAMP8Q9BV40 100 aa0.22□□□□□ -2.37
CD44-235ENST00000532339 UBL5Q9BZL1 73 aa0.21□□□□□ -2.38
CD44-235ENST00000532339 COX8AP10176 69 aa0.2□□□□□ -2.38
CD44-235ENST00000532339 LINC01558Q9Y6Z2 57 aa0.2□□□□□ -2.38
CD44-235ENST00000532339 UQCR11O14957 56 aa0.18□□□□□ -2.38
CD44-235ENST00000532339 S100A1P23297 94 aa0.18□□□□□ -2.38
CD44-235ENST00000532339 SVBPQ8N300 66 aa0.16□□□□□ -2.38
CD44-235ENST00000532339 APOC3P02656 99 aa0.15□□□□□ -2.39
CD44-235ENST00000532339 ATP5EP56381 51 aaPredicted RBP0.15□□□□□ -2.39
CD44-235ENST00000532339 C14orf144Q96I85 54 aa0.13□□□□□ -2.39
CD44-235ENST00000532339 UQCR10Q9UDW1 63 aa0.11□□□□□ -2.39
CD44-235ENST00000532339 HSD52Q0P140 79 aa0.1□□□□□ -2.39
CD44-235ENST00000532339 SERP2Q8N6R1 65 aa0.1□□□□□ -2.39
CD44-235ENST00000532339 GTF2H5Q6ZYL4 71 aa0.08□□□□□ -2.4
CD44-235ENST00000532339 A0A1B0GU69 56 aa-0.02□□□□□ -2.41
CD44-235ENST00000532339 ATP5EP2Q5VTU8 51 aa-0.02□□□□□ -2.41
CD44-235ENST00000532339 PRM1P04553 51 aa-0.03□□□□□ -2.41
CD44-235ENST00000532339 M0R143 59 aa-0.06□□□□□ -2.42
CD44-235ENST00000532339 COL5A1-AS1Q5SY13 56 aa-0.07□□□□□ -2.42
CD44-235ENST00000532339 ETDBQ3ZM63 59 aa-0.09□□□□□ -2.42
CD44-235ENST00000532339 PYY3Q5JQD4 70 aa-0.09□□□□□ -2.42
CD44-235ENST00000532339 LINC00643Q86TS7 51 aa-0.11□□□□□ -2.43
Retrieved 78 of 20,778 RNA–protein pairs in 51.1 ms