RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 PRR15LQ9BU68 103 aa5.91□□□□□ -1.46
CPSF1-207ENST00000531727 A8MU10 97 aa5.9□□□□□ -1.46
CPSF1-207ENST00000531727 LCE3AQ5TA76 89 aa5.89□□□□□ -1.47
CPSF1-207ENST00000531727 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
CPSF1-207ENST00000531727 TNP1P09430 55 aa5.86□□□□□ -1.47
CPSF1-207ENST00000531727 KRTAP4-3Q9BYR4 195 aa5.85□□□□□ -1.47
CPSF1-207ENST00000531727 KRTAP5-4Q6L8H1 288 aa5.83□□□□□ -1.48
CPSF1-207ENST00000531727 RPS28P62857 69 aaKnown RBP5.81□□□□□ -1.48
CPSF1-207ENST00000531727 Q1T7F1 81 aa5.81□□□□□ -1.48
CPSF1-207ENST00000531727 AHNAK2Q8IVF2 5795 aa5.8□□□□□ -1.48
CPSF1-207ENST00000531727 PSPHP1O15172 72 aa5.8□□□□□ -1.48
CPSF1-207ENST00000531727 V9GYY9 64 aa5.75□□□□□ -1.49
CPSF1-207ENST00000531727 KRTAP4-6Q9BYQ5 205 aa5.74□□□□□ -1.49
CPSF1-207ENST00000531727 UQCR11O14957 56 aa5.71□□□□□ -1.5
CPSF1-207ENST00000531727 KRTAP5-10Q6L8G5 202 aa5.68□□□□□ -1.5
CPSF1-207ENST00000531727 KRTAP12-3P60328 96 aa5.67□□□□□ -1.5
CPSF1-207ENST00000531727 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
CPSF1-207ENST00000531727 MIR22HGQ0VDD5 57 aa5.66□□□□□ -1.5
CPSF1-207ENST00000531727 A6NED7 52 aa5.57□□□□□ -1.52
CPSF1-207ENST00000531727 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
CPSF1-207ENST00000531727 KRTAP20-2Q3LI61 65 aa5.51□□□□□ -1.53
CPSF1-207ENST00000531727 KRTAP5-3Q6L8H2 238 aa5.5□□□□□ -1.53
CPSF1-207ENST00000531727 KRTAP5-7Q6L8G8 165 aa5.49□□□□□ -1.53
CPSF1-207ENST00000531727 K7ERS5 55 aa5.48□□□□□ -1.53
CPSF1-207ENST00000531727 SPRR5A0A1B0GTR4 108 aa5.47□□□□□ -1.53
CPSF1-207ENST00000531727 KRTAP25-1Q3LHN0 102 aa5.44□□□□□ -1.54
CPSF1-207ENST00000531727 KRTAP12-4P60329 112 aa5.42□□□□□ -1.54
CPSF1-207ENST00000531727 CDC42SE1Q9NRR8 79 aa5.39□□□□□ -1.55
CPSF1-207ENST00000531727 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
CPSF1-207ENST00000531727 PRO0628Q9UI54 55 aa5.37□□□□□ -1.55
CPSF1-207ENST00000531727 KRTAP19-4Q3LI73 84 aa5.34□□□□□ -1.55
CPSF1-207ENST00000531727 SYNE1Q8NF91 8797 aaKnown RBP5.28□□□□□ -1.56
CPSF1-207ENST00000531727 KRTAP23-1A1A580 65 aa5.23□□□□□ -1.57
CPSF1-207ENST00000531727 KRTAP15-1Q3LI76 137 aa5.23□□□□□ -1.57
CPSF1-207ENST00000531727 LCE3CQ5T5A8 94 aa5.2□□□□□ -1.58
CPSF1-207ENST00000531727 BRK1Q8WUW1 75 aa5.2□□□□□ -1.58
CPSF1-207ENST00000531727 ROMO1P60602 79 aa5.17□□□□□ -1.58
CPSF1-207ENST00000531727 MT1AP04731 61 aa5.08□□□□□ -1.6
CPSF1-207ENST00000531727 KRTAP5-2Q701N4 177 aa5.08□□□□□ -1.6
CPSF1-207ENST00000531727 KRTAP4-11Q9BYQ6 195 aa5.07□□□□□ -1.6
CPSF1-207ENST00000531727 PMAIP1Q13794 54 aa5.06□□□□□ -1.6
CPSF1-207ENST00000531727 KRTAP6-1Q3LI64 71 aa5.06□□□□□ -1.6
CPSF1-207ENST00000531727 KRTAP9-4Q9BYQ2 154 aa4.93□□□□□ -1.62
CPSF1-207ENST00000531727 KRTAP9-6A8MVA2 160 aa4.92□□□□□ -1.62
CPSF1-207ENST00000531727 KRTAP5-8O75690 187 aa4.9□□□□□ -1.63
CPSF1-207ENST00000531727 KTN1-AS1Q86SY8 53 aa4.88□□□□□ -1.63
CPSF1-207ENST00000531727 KRTAP6-2Q3LI66 62 aa4.87□□□□□ -1.63
CPSF1-207ENST00000531727 AHNAKQ09666 5890 aaKnown RBP4.8□□□□□ -1.64
CPSF1-207ENST00000531727 MUC5ACP98088 5654 aa4.79□□□□□ -1.64
CPSF1-207ENST00000531727 MUC5BQ9HC84 5762 aaPredicted RBP4.77□□□□□ -1.65
CPSF1-207ENST00000531727 PRAC1Q96KF2 57 aa4.74□□□□□ -1.65
CPSF1-207ENST00000531727 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
CPSF1-207ENST00000531727 KRTAP9-9Q9BYP9 154 aa4.68□□□□□ -1.66
CPSF1-207ENST00000531727 MT3P25713 68 aa4.66□□□□□ -1.66
CPSF1-207ENST00000531727 KRTAP5-1Q6L8H4 278 aa4.58□□□□□ -1.68
CPSF1-207ENST00000531727 H3BS24 57 aa4.53□□□□□ -1.68
CPSF1-207ENST00000531727 LCE1EQ5T753 118 aa4.33□□□□□ -1.72
CPSF1-207ENST00000531727 KRTAP4-2Q9BYR5 136 aa4.1□□□□□ -1.75
CPSF1-207ENST00000531727 LCE1BQ5T7P3 118 aa4.08□□□□□ -1.76
CPSF1-207ENST00000531727 LCE1CQ5T751 118 aa4.02□□□□□ -1.77
CPSF1-207ENST00000531727 A0A0A0MQY5 61 aa3.96□□□□□ -1.78
CPSF1-207ENST00000531727 NDUFAF8A1L188 74 aa3.87□□□□□ -1.79
CPSF1-207ENST00000531727 LUZP6Q538Z0 58 aa3.81□□□□□ -1.8
CPSF1-207ENST00000531727 KRTAP4-12Q9BQ66 201 aa3.76□□□□□ -1.81
CPSF1-207ENST00000531727 LCE3DQ9BYE3 92 aa3.71□□□□□ -1.82
CPSF1-207ENST00000531727 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.83
CPSF1-207ENST00000531727 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
CPSF1-207ENST00000531727 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
CPSF1-207ENST00000531727 LCE3EQ5T5B0 92 aa3.45□□□□□ -1.86
CPSF1-207ENST00000531727 INE1O15225 51 aa3.37□□□□□ -1.87
CPSF1-207ENST00000531727 KRTAP21-2Q3LI59 83 aa3.34□□□□□ -1.87
CPSF1-207ENST00000531727 PHGR1C9JFL3 82 aa3.31□□□□□ -1.88
CPSF1-207ENST00000531727 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
CPSF1-207ENST00000531727 MUC19Q7Z5P9 8384 aa2.93□□□□□ -1.94
CPSF1-207ENST00000531727 PRM1P04553 51 aa2.71□□□□□ -1.98
CPSF1-207ENST00000531727 KRTAP21-1Q3LI58 79 aa2.52□□□□□ -2.01
CPSF1-207ENST00000531727 MUC16Q8WXI7 14507 aa2.13□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 73.9 ms