RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	KRTAP9-7	A8MTY7	169 aa		3.91	□□□□□ -1.78
NXF1-209	ENST00000531474	MT1X	P80297	61 aa		3.91	□□□□□ -1.78
NXF1-209	ENST00000531474	LCE5A	Q5TCM9	118 aa		3.81	□□□□□ -1.8
NXF1-209	ENST00000531474	MACF1	Q9UPN3	7388 aa	Known RBP	3.78	□□□□□ -1.8
NXF1-209	ENST00000531474	SYNE2	Q8WXH0	6885 aa	Known RBP	3.74	□□□□□ -1.81
NXF1-209	ENST00000531474	KRTAP10-7	P60409	375 aa	Predicted RBP	3.74	□□□□□ -1.81
NXF1-209	ENST00000531474	KRTAP6-3	Q3LI67	103 aa		3.72	□□□□□ -1.81
NXF1-209	ENST00000531474	KRTAP10-12	P60413	245 aa		3.7	□□□□□ -1.82
NXF1-209	ENST00000531474	LCE3A	Q5TA76	89 aa		3.69	□□□□□ -1.82
NXF1-209	ENST00000531474	KRTAP8-1	Q8IUC2	63 aa		3.69	□□□□□ -1.82
NXF1-209	ENST00000531474	MT3	P25713	68 aa		3.65	□□□□□ -1.83
NXF1-209	ENST00000531474	KMT2D	O14686	5537 aa		3.64	□□□□□ -1.83
NXF1-209	ENST00000531474	KRTAP5-9	P26371	169 aa		3.63	□□□□□ -1.83
NXF1-209	ENST00000531474	SPRR2F	Q96RM1	72 aa		3.61	□□□□□ -1.83
NXF1-209	ENST00000531474	KRTAP12-3	P60328	96 aa		3.59	□□□□□ -1.83
NXF1-209	ENST00000531474	LUZP6	Q538Z0	58 aa		3.59	□□□□□ -1.83
NXF1-209	ENST00000531474	SPRR5	A0A1B0GTR4	108 aa		3.53	□□□□□ -1.84
NXF1-209	ENST00000531474	NEB	P20929	6669 aa		3.52	□□□□□ -1.85
NXF1-209	ENST00000531474	MUC12	Q9UKN1	5478 aa		3.52	□□□□□ -1.85
NXF1-209	ENST00000531474	SPRR2E	P22531	72 aa		3.51	□□□□□ -1.85
NXF1-209	ENST00000531474	SPRR2B	P35325	72 aa		3.51	□□□□□ -1.85
NXF1-209	ENST00000531474	SPRR2A	P35326	72 aa		3.51	□□□□□ -1.85
NXF1-209	ENST00000531474	MDN1	Q9NU22	5596 aa		3.51	□□□□□ -1.85
NXF1-209	ENST00000531474	KRTAP19-7	Q3SYF9	63 aa		3.49	□□□□□ -1.85
NXF1-209	ENST00000531474	KRTAP19-5	Q3LI72	72 aa		3.48	□□□□□ -1.85
NXF1-209	ENST00000531474	LCE1A	Q5T7P2	110 aa		3.47	□□□□□ -1.85
NXF1-209	ENST00000531474	MT1E	P04732	61 aa		3.45	□□□□□ -1.86
NXF1-209	ENST00000531474	SPRR2D	P22532	72 aa		3.39	□□□□□ -1.87
NXF1-209	ENST00000531474	LCE3C	Q5T5A8	94 aa		3.37	□□□□□ -1.87
NXF1-209	ENST00000531474	KRTAP19-3	Q7Z4W3	81 aa		3.37	□□□□□ -1.87
NXF1-209	ENST00000531474	KRTAP20-1	Q3LI63	56 aa		3.35	□□□□□ -1.87
NXF1-209	ENST00000531474	MT1L	Q93083	61 aa		3.34	□□□□□ -1.87
NXF1-209	ENST00000531474	KRTAP2-3	P0C7H8	128 aa		3.31	□□□□□ -1.88
NXF1-209	ENST00000531474	MT1G	P13640	62 aa		3.31	□□□□□ -1.88
NXF1-209	ENST00000531474	KRTAP2-4	Q9BYR9	128 aa		3.31	□□□□□ -1.88
NXF1-209	ENST00000531474	MT1M	Q8N339	61 aa		3.27	□□□□□ -1.89
NXF1-209	ENST00000531474	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.22	□□□□□ -1.89
NXF1-209	ENST00000531474	KRTAP2-2	Q9BYT5	123 aa		3.22	□□□□□ -1.89
NXF1-209	ENST00000531474	KRTAP2-1	Q9BYU5	128 aa		3.22	□□□□□ -1.89
NXF1-209	ENST00000531474	KRTAP4-3	Q9BYR4	195 aa		3.2	□□□□□ -1.9
NXF1-209	ENST00000531474	DST	Q03001	7570 aa	Known RBP	3.1	□□□□□ -1.91
NXF1-209	ENST00000531474	KRTAP9-6	A8MVA2	160 aa		3.09	□□□□□ -1.91
NXF1-209	ENST00000531474	LCE1F	Q5T754	118 aa		3.09	□□□□□ -1.91
NXF1-209	ENST00000531474	INE1	O15225	51 aa		3	□□□□□ -1.93
NXF1-209	ENST00000531474	KRTAP5-4	Q6L8H1	288 aa		2.96	□□□□□ -1.94
NXF1-209	ENST00000531474	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.96	□□□□□ -1.94
NXF1-209	ENST00000531474	MT4	P47944	62 aa		2.95	□□□□□ -1.94
NXF1-209	ENST00000531474	KRTAP5-11	Q6L8G4	156 aa		2.92	□□□□□ -1.94
NXF1-209	ENST00000531474	HMCN1	Q96RW7	5635 aa		2.88	□□□□□ -1.95
NXF1-209	ENST00000531474	KRTAP12-4	P60329	112 aa		2.85	□□□□□ -1.95
NXF1-209	ENST00000531474	MT1A	P04731	61 aa		2.84	□□□□□ -1.95
NXF1-209	ENST00000531474	KRTAP6-1	Q3LI64	71 aa		2.81	□□□□□ -1.96
NXF1-209	ENST00000531474	KRTAP20-2	Q3LI61	65 aa		2.8	□□□□□ -1.96
NXF1-209	ENST00000531474	GPR98	Q8WXG9	6306 aa		2.79	□□□□□ -1.96
NXF1-209	ENST00000531474	SYNE1	Q8NF91	8797 aa	Known RBP	2.77	□□□□□ -1.97
NXF1-209	ENST00000531474	KRTAP5-1	Q6L8H4	278 aa		2.76	□□□□□ -1.97
NXF1-209	ENST00000531474	KRTAP4-4	Q9BYR3	166 aa		2.72	□□□□□ -1.97
NXF1-209	ENST00000531474	AHNAK2	Q8IVF2	5795 aa		2.7	□□□□□ -1.98
NXF1-209	ENST00000531474	KRTAP6-2	Q3LI66	62 aa		2.65	□□□□□ -1.99
NXF1-209	ENST00000531474	KRTAP5-2	Q701N4	177 aa		2.64	□□□□□ -1.99
NXF1-209	ENST00000531474	KRTAP5-10	Q6L8G5	202 aa		2.59	□□□□□ -1.99
NXF1-209	ENST00000531474	LCE3E	Q5T5B0	92 aa		2.58	□□□□□ -2
NXF1-209	ENST00000531474	LCE3D	Q9BYE3	92 aa		2.58	□□□□□ -2
NXF1-209	ENST00000531474	LCE1E	Q5T753	118 aa		2.53	□□□□□ -2
NXF1-209	ENST00000531474	KRTAP5-7	Q6L8G8	165 aa		2.46	□□□□□ -2.02
NXF1-209	ENST00000531474	KRTAP5-8	O75690	187 aa		2.4	□□□□□ -2.03
NXF1-209	ENST00000531474	OBSCN	Q5VST9	7968 aa		2.36	□□□□□ -2.03
NXF1-209	ENST00000531474	MUC5AC	P98088	5654 aa		2.27	□□□□□ -2.05
NXF1-209	ENST00000531474	PRM1	P04553	51 aa		2.21	□□□□□ -2.06
NXF1-209	ENST00000531474	AHNAK	Q09666	5890 aa	Known RBP	2.2	□□□□□ -2.06
NXF1-209	ENST00000531474	LCE1B	Q5T7P3	118 aa		2.2	□□□□□ -2.06
NXF1-209	ENST00000531474	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.2	□□□□□ -2.06
NXF1-209	ENST00000531474	LCE1C	Q5T751	118 aa		2.14	□□□□□ -2.07
NXF1-209	ENST00000531474	KRTAP21-2	Q3LI59	83 aa		1.84	□□□□□ -2.11
NXF1-209	ENST00000531474	PHGR1	C9JFL3	82 aa		1.65	□□□□□ -2.15
NXF1-209	ENST00000531474	MUC19	Q7Z5P9	8384 aa		1.42	□□□□□ -2.18
NXF1-209	ENST00000531474	KRTAP21-1	Q3LI58	79 aa		1.4	□□□□□ -2.19
NXF1-209	ENST00000531474	MUC16	Q8WXI7	14507 aa		1.05	□□□□□ -2.24

Retrieved 78 of 20,778 RNA–protein pairs in 190.8 ms