RNA–Protein interactions for RNA: ENST00000529045.1

PTPN22-208, Transcript of protein tyrosine phosphatase, non-receptor type 22, human

TSL 4

Gene PTPN22, Length 527 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN22-208	ENST00000529045	SSPO	A2VEC9	5147 aa		3.46	□□□□□ -1.86
PTPN22-208	ENST00000529045	KRTAP5-4	Q6L8H1	288 aa		3.46	□□□□□ -1.86
PTPN22-208	ENST00000529045		R4GN34	69 aa		3.44	□□□□□ -1.86
PTPN22-208	ENST00000529045	USH2A	O75445	5202 aa		3.43	□□□□□ -1.86
PTPN22-208	ENST00000529045	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.4	□□□□□ -1.87
PTPN22-208	ENST00000529045	KRTAP5-9	P26371	169 aa		3.39	□□□□□ -1.87
PTPN22-208	ENST00000529045	NEB	P20929	6669 aa		3.38	□□□□□ -1.87
PTPN22-208	ENST00000529045	MT1H	P80294	61 aa		3.37	□□□□□ -1.87
PTPN22-208	ENST00000529045	LCE3E	Q5T5B0	92 aa		3.37	□□□□□ -1.87
PTPN22-208	ENST00000529045	KRTAP4-1	Q9BYQ7	146 aa		3.31	□□□□□ -1.88
PTPN22-208	ENST00000529045	SPRR5	A0A1B0GTR4	108 aa		3.3	□□□□□ -1.88
PTPN22-208	ENST00000529045		M0R2T5	61 aa		3.29	□□□□□ -1.88
PTPN22-208	ENST00000529045	KRTAP19-2	Q3LHN2	52 aa		3.29	□□□□□ -1.88
PTPN22-208	ENST00000529045	TNP1	P09430	55 aa		3.26	□□□□□ -1.89
PTPN22-208	ENST00000529045	FLG	P20930	4061 aa	Predicted RBP	3.25	□□□□□ -1.89
PTPN22-208	ENST00000529045	KRTAP6-3	Q3LI67	103 aa		3.23	□□□□□ -1.89
PTPN22-208	ENST00000529045	MUC12	Q9UKN1	5478 aa		3.18	□□□□□ -1.9
PTPN22-208	ENST00000529045	KRTAP20-1	Q3LI63	56 aa		3.17	□□□□□ -1.9
PTPN22-208	ENST00000529045	INE1	O15225	51 aa		3.15	□□□□□ -1.91
PTPN22-208	ENST00000529045	PRO2289	Q9P1D8	64 aa		3.15	□□□□□ -1.91
PTPN22-208	ENST00000529045	OBSCN	Q5VST9	7968 aa		3.12	□□□□□ -1.91
PTPN22-208	ENST00000529045	KRTAP19-6	Q3LI70	58 aa		3.11	□□□□□ -1.91
PTPN22-208	ENST00000529045	KRTAP4-3	Q9BYR4	195 aa		3.1	□□□□□ -1.91
PTPN22-208	ENST00000529045	GPR98	Q8WXG9	6306 aa		3.08	□□□□□ -1.92
PTPN22-208	ENST00000529045	LCE3A	Q5TA76	89 aa		3.04	□□□□□ -1.92
PTPN22-208	ENST00000529045	SPRR2G	Q9BYE4	73 aa		3.04	□□□□□ -1.92
PTPN22-208	ENST00000529045	KMT2D	O14686	5537 aa		3.03	□□□□□ -1.92
PTPN22-208	ENST00000529045	MDN1	Q9NU22	5596 aa		3.03	□□□□□ -1.93
PTPN22-208	ENST00000529045	MT2A	P02795	61 aa		3.02	□□□□□ -1.93
PTPN22-208	ENST00000529045	KRTAP8-1	Q8IUC2	63 aa		3	□□□□□ -1.93
PTPN22-208	ENST00000529045	MT1F	P04733	61 aa		2.99	□□□□□ -1.93
PTPN22-208	ENST00000529045	KRTAP2-3	P0C7H8	128 aa		2.99	□□□□□ -1.93
PTPN22-208	ENST00000529045	KRTAP2-4	Q9BYR9	128 aa		2.99	□□□□□ -1.93
PTPN22-208	ENST00000529045	KRTAP10-10	P60014	251 aa		2.97	□□□□□ -1.93
PTPN22-208	ENST00000529045	KRTAP19-8	Q3LI54	63 aa		2.89	□□□□□ -1.95
PTPN22-208	ENST00000529045	LCE3D	Q9BYE3	92 aa		2.88	□□□□□ -1.95
PTPN22-208	ENST00000529045	KRTAP2-1	Q9BYU5	128 aa		2.87	□□□□□ -1.95
PTPN22-208	ENST00000529045	KRTAP12-3	P60328	96 aa		2.86	□□□□□ -1.95
PTPN22-208	ENST00000529045	KRTAP5-2	Q701N4	177 aa		2.86	□□□□□ -1.95
PTPN22-208	ENST00000529045	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.79	□□□□□ -1.96
PTPN22-208	ENST00000529045	MT1X	P80297	61 aa		2.78	□□□□□ -1.96
PTPN22-208	ENST00000529045	SPRR2E	P22531	72 aa		2.76	□□□□□ -1.97
PTPN22-208	ENST00000529045	SPRR2B	P35325	72 aa		2.76	□□□□□ -1.97
PTPN22-208	ENST00000529045	SPRR2A	P35326	72 aa		2.76	□□□□□ -1.97
PTPN22-208	ENST00000529045	MT1B	P07438	61 aa		2.75	□□□□□ -1.97
PTPN22-208	ENST00000529045	DST	Q03001	7570 aa	Known RBP	2.73	□□□□□ -1.97
PTPN22-208	ENST00000529045	SPRR2F	Q96RM1	72 aa		2.7	□□□□□ -1.98
PTPN22-208	ENST00000529045	SPRR2D	P22532	72 aa		2.68	□□□□□ -1.98
PTPN22-208	ENST00000529045	AHNAK2	Q8IVF2	5795 aa		2.66	□□□□□ -1.98
PTPN22-208	ENST00000529045	LCE1C	Q5T751	118 aa		2.63	□□□□□ -1.99
PTPN22-208	ENST00000529045	LCE1B	Q5T7P3	118 aa		2.63	□□□□□ -1.99
PTPN22-208	ENST00000529045	KRTAP19-5	Q3LI72	72 aa		2.62	□□□□□ -1.99
PTPN22-208	ENST00000529045	HMCN1	Q96RW7	5635 aa		2.58	□□□□□ -2
PTPN22-208	ENST00000529045	KRTAP5-10	Q6L8G5	202 aa		2.5	□□□□□ -2.01
PTPN22-208	ENST00000529045	KRTAP5-7	Q6L8G8	165 aa		2.48	□□□□□ -2.01
PTPN22-208	ENST00000529045	KRTAP19-7	Q3SYF9	63 aa		2.47	□□□□□ -2.01
PTPN22-208	ENST00000529045	MT1L	Q93083	61 aa		2.44	□□□□□ -2.02
PTPN22-208	ENST00000529045	MT1E	P04732	61 aa		2.43	□□□□□ -2.02
PTPN22-208	ENST00000529045	AHNAK	Q09666	5890 aa	Known RBP	2.38	□□□□□ -2.03
PTPN22-208	ENST00000529045	KRTAP5-8	O75690	187 aa		2.35	□□□□□ -2.03
PTPN22-208	ENST00000529045	MT4	P47944	62 aa		2.33	□□□□□ -2.04
PTPN22-208	ENST00000529045	KRTAP12-4	P60329	112 aa		2.31	□□□□□ -2.04
PTPN22-208	ENST00000529045	MT1G	P13640	62 aa		2.27	□□□□□ -2.05
PTPN22-208	ENST00000529045	MT1A	P04731	61 aa		2.26	□□□□□ -2.05
PTPN22-208	ENST00000529045	MUC5AC	P98088	5654 aa		2.25	□□□□□ -2.05
PTPN22-208	ENST00000529045	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.24	□□□□□ -2.05
PTPN22-208	ENST00000529045	MT1M	Q8N339	61 aa		2.24	□□□□□ -2.05
PTPN22-208	ENST00000529045	KRTAP19-3	Q7Z4W3	81 aa		2.23	□□□□□ -2.05
PTPN22-208	ENST00000529045	MUC19	Q7Z5P9	8384 aa		2.15	□□□□□ -2.07
PTPN22-208	ENST00000529045	KRTAP20-2	Q3LI61	65 aa		2.13	□□□□□ -2.07
PTPN22-208	ENST00000529045	PRM1	P04553	51 aa		2.05	□□□□□ -2.08
PTPN22-208	ENST00000529045	KRTAP6-1	Q3LI64	71 aa		2.02	□□□□□ -2.09
PTPN22-208	ENST00000529045	SYNE1	Q8NF91	8797 aa	Known RBP	1.95	□□□□□ -2.1
PTPN22-208	ENST00000529045	KRTAP6-2	Q3LI66	62 aa		1.94	□□□□□ -2.1
PTPN22-208	ENST00000529045	KRTAP21-2	Q3LI59	83 aa		1.91	□□□□□ -2.1
PTPN22-208	ENST00000529045	PHGR1	C9JFL3	82 aa		1.47	□□□□□ -2.17
PTPN22-208	ENST00000529045	KRTAP21-1	Q3LI58	79 aa		1.39	□□□□□ -2.19
PTPN22-208	ENST00000529045	MUC16	Q8WXI7	14507 aa		0.9	□□□□□ -2.26

Retrieved 78 of 20,778 RNA–protein pairs in 59.7 ms