RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 MT1GP13640 62 aa3.83□□□□□ -1.8
CPSF1-203ENST00000527916 KRTAP19-5Q3LI72 72 aa3.8□□□□□ -1.8
CPSF1-203ENST00000527916 KRTAP5-3Q6L8H2 238 aa3.8□□□□□ -1.8
CPSF1-203ENST00000527916 KRTAP4-6Q9BYQ5 205 aa3.8□□□□□ -1.8
CPSF1-203ENST00000527916 V9GYY9 64 aa3.8□□□□□ -1.8
CPSF1-203ENST00000527916 SPRR5A0A1B0GTR4 108 aa3.79□□□□□ -1.8
CPSF1-203ENST00000527916 Q1T7F1 81 aa3.79□□□□□ -1.8
CPSF1-203ENST00000527916 KRTAP5-4Q6L8H1 288 aa3.79□□□□□ -1.8
CPSF1-203ENST00000527916 PRO0628Q9UI54 55 aa3.78□□□□□ -1.8
CPSF1-203ENST00000527916 A8MU10 97 aa3.75□□□□□ -1.81
CPSF1-203ENST00000527916 MT1MQ8N339 61 aa3.74□□□□□ -1.81
CPSF1-203ENST00000527916 TNP1P09430 55 aa3.73□□□□□ -1.81
CPSF1-203ENST00000527916 BRK1Q8WUW1 75 aa3.72□□□□□ -1.81
CPSF1-203ENST00000527916 MT1LQ93083 61 aa3.71□□□□□ -1.82
CPSF1-203ENST00000527916 PRR15LQ9BU68 103 aa3.71□□□□□ -1.82
CPSF1-203ENST00000527916 C10orf95Q9H7T3 257 aa3.71□□□□□ -1.82
CPSF1-203ENST00000527916 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
CPSF1-203ENST00000527916 PSPHP1O15172 72 aa3.68□□□□□ -1.82
CPSF1-203ENST00000527916 LINC01558Q9Y6Z2 57 aa3.67□□□□□ -1.82
CPSF1-203ENST00000527916 KRTAP4-3Q9BYR4 195 aa3.63□□□□□ -1.83
CPSF1-203ENST00000527916 KRTAP20-2Q3LI61 65 aa3.62□□□□□ -1.83
CPSF1-203ENST00000527916 A6NED7 52 aa3.6□□□□□ -1.83
CPSF1-203ENST00000527916 UQCR11O14957 56 aa3.6□□□□□ -1.83
CPSF1-203ENST00000527916 KRTAP12-3P60328 96 aa3.57□□□□□ -1.84
CPSF1-203ENST00000527916 CDC42SE1Q9NRR8 79 aa3.56□□□□□ -1.84
CPSF1-203ENST00000527916 PMAIP1Q13794 54 aa3.54□□□□□ -1.84
CPSF1-203ENST00000527916 KRTAP12-4P60329 112 aa3.53□□□□□ -1.84
CPSF1-203ENST00000527916 AHNAKQ09666 5890 aaKnown RBP3.52□□□□□ -1.85
CPSF1-203ENST00000527916 KRTAP25-1Q3LHN0 102 aa3.5□□□□□ -1.85
CPSF1-203ENST00000527916 KRTAP4-7Q9BYR0 210 aa3.5□□□□□ -1.85
CPSF1-203ENST00000527916 MIR22HGQ0VDD5 57 aa3.49□□□□□ -1.85
CPSF1-203ENST00000527916 KRTAP19-4Q3LI73 84 aa3.46□□□□□ -1.86
CPSF1-203ENST00000527916 KTN1-AS1Q86SY8 53 aa3.46□□□□□ -1.86
CPSF1-203ENST00000527916 K7ERS5 55 aa3.45□□□□□ -1.86
CPSF1-203ENST00000527916 KRTAP5-5Q701N2 237 aaPredicted RBP3.44□□□□□ -1.86
CPSF1-203ENST00000527916 MUC5BQ9HC84 5762 aaPredicted RBP3.42□□□□□ -1.86
CPSF1-203ENST00000527916 KRTAP23-1A1A580 65 aa3.42□□□□□ -1.86
CPSF1-203ENST00000527916 KRTAP4-11Q9BYQ6 195 aa3.42□□□□□ -1.86
CPSF1-203ENST00000527916 MUC5ACP98088 5654 aa3.41□□□□□ -1.86
CPSF1-203ENST00000527916 SYNE1Q8NF91 8797 aaKnown RBP3.39□□□□□ -1.87
CPSF1-203ENST00000527916 KRTAP15-1Q3LI76 137 aa3.33□□□□□ -1.88
CPSF1-203ENST00000527916 LOC100996750A0A140TA64 210 aa3.31□□□□□ -1.88
CPSF1-203ENST00000527916 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
CPSF1-203ENST00000527916 LCE3CQ5T5A8 94 aa3.29□□□□□ -1.88
CPSF1-203ENST00000527916 PRAC1Q96KF2 57 aa3.26□□□□□ -1.89
CPSF1-203ENST00000527916 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
CPSF1-203ENST00000527916 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
CPSF1-203ENST00000527916 ROMO1P60602 79 aa3.19□□□□□ -1.9
CPSF1-203ENST00000527916 MT1AP04731 61 aa3.17□□□□□ -1.9
CPSF1-203ENST00000527916 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
CPSF1-203ENST00000527916 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
CPSF1-203ENST00000527916 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
CPSF1-203ENST00000527916 KRTAP9-4Q9BYQ2 154 aa3.08□□□□□ -1.92
CPSF1-203ENST00000527916 KRTAP6-2Q3LI66 62 aa3.06□□□□□ -1.92
CPSF1-203ENST00000527916 KRTAP5-1Q6L8H4 278 aa2.98□□□□□ -1.93
CPSF1-203ENST00000527916 MT3P25713 68 aa2.91□□□□□ -1.94
CPSF1-203ENST00000527916 H3BS24 57 aa2.79□□□□□ -1.96
CPSF1-203ENST00000527916 LCE1EQ5T753 118 aa2.74□□□□□ -1.97
CPSF1-203ENST00000527916 NDUFAF8A1L188 74 aa2.73□□□□□ -1.97
CPSF1-203ENST00000527916 LUZP6Q538Z0 58 aa2.68□□□□□ -1.98
CPSF1-203ENST00000527916 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
CPSF1-203ENST00000527916 KRTAP4-2Q9BYR5 136 aa2.59□□□□□ -1.99
CPSF1-203ENST00000527916 LCE1CQ5T751 118 aa2.54□□□□□ -2
CPSF1-203ENST00000527916 A0A0A0MQY5 61 aa2.51□□□□□ -2.01
CPSF1-203ENST00000527916 KRTAP4-12Q9BQ66 201 aa2.51□□□□□ -2.01
CPSF1-203ENST00000527916 KRTAP5-11Q6L8G4 156 aa2.4□□□□□ -2.03
CPSF1-203ENST00000527916 LCE1FQ5T754 118 aa2.39□□□□□ -2.03
CPSF1-203ENST00000527916 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
CPSF1-203ENST00000527916 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
CPSF1-203ENST00000527916 INE1O15225 51 aa2.31□□□□□ -2.04
CPSF1-203ENST00000527916 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.29□□□□□ -2.04
CPSF1-203ENST00000527916 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
CPSF1-203ENST00000527916 KRTAP21-2Q3LI59 83 aa2.08□□□□□ -2.08
CPSF1-203ENST00000527916 MUC19Q7Z5P9 8384 aa1.97□□□□□ -2.09
CPSF1-203ENST00000527916 KRTAP4-4Q9BYR3 166 aa1.93□□□□□ -2.1
CPSF1-203ENST00000527916 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
CPSF1-203ENST00000527916 PRM1P04553 51 aa1.65□□□□□ -2.15
CPSF1-203ENST00000527916 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 56.2 ms