RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 LINC01556Q5JQF7 62 aa1.2□□□□□ -2.22
CD44-223ENST00000526553 PLAC8Q9NZF1 115 aa1.2□□□□□ -2.22
CD44-223ENST00000526553 MUC17Q685J3 4493 aa1.18□□□□□ -2.22
CD44-223ENST00000526553 CLPSL2Q6UWE3 100 aa1.17□□□□□ -2.22
CD44-223ENST00000526553 SPRR1BP22528 89 aa1.16□□□□□ -2.22
CD44-223ENST00000526553 SPRR1AP35321 89 aa1.16□□□□□ -2.22
CD44-223ENST00000526553 SPINK6Q6UWN8 80 aa1.16□□□□□ -2.22
CD44-223ENST00000526553 PLAC4Q8WY50 150 aa1.16□□□□□ -2.22
CD44-223ENST00000526553 LINC00472Q9H8W2 130 aa1.16□□□□□ -2.22
CD44-223ENST00000526553 RPL37P61927 97 aaKnown RBP1.15□□□□□ -2.23
CD44-223ENST00000526553 MMP24-AS1A0A0U1RRL7 71 aa1.14□□□□□ -2.23
CD44-223ENST00000526553 A0A096LNI7 61 aa1.13□□□□□ -2.23
CD44-223ENST00000526553 PRLHP81277 87 aa1.13□□□□□ -2.23
CD44-223ENST00000526553 H1FX-AS1Q4G0G2 97 aa1.12□□□□□ -2.23
CD44-223ENST00000526553 Q96NJ1 140 aa1.11□□□□□ -2.23
CD44-223ENST00000526553 SYNE2Q8WXH0 6885 aaKnown RBP1.11□□□□□ -2.23
CD44-223ENST00000526553 M0R2T5 61 aa1.1□□□□□ -2.23
CD44-223ENST00000526553 M0QZ58 72 aa1.09□□□□□ -2.23
CD44-223ENST00000526553 SPINK1P00995 79 aa1.09□□□□□ -2.23
CD44-223ENST00000526553 SSPOA2VEC9 5147 aa1.09□□□□□ -2.23
CD44-223ENST00000526553 USH2AO75445 5202 aa1.08□□□□□ -2.24
CD44-223ENST00000526553 MACF1Q9UPN3 7388 aaKnown RBP1.08□□□□□ -2.24
CD44-223ENST00000526553 RPS29P62273 56 aaKnown RBP1.07□□□□□ -2.24
CD44-223ENST00000526553 FLGP20930 4061 aaPredicted RBP1.06□□□□□ -2.24
CD44-223ENST00000526553 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
CD44-223ENST00000526553 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
CD44-223ENST00000526553 MT1HP80294 61 aa1.05□□□□□ -2.24
CD44-223ENST00000526553 NEBP20929 6669 aa1.05□□□□□ -2.24
CD44-223ENST00000526553 C9orf92A6NGG3 77 aa1.03□□□□□ -2.24
CD44-223ENST00000526553 H0YAA0 97 aa1.03□□□□□ -2.24
CD44-223ENST00000526553 MUC12Q9UKN1 5478 aa1.02□□□□□ -2.25
CD44-223ENST00000526553 A0A0D9SG42 100 aa1.01□□□□□ -2.25
CD44-223ENST00000526553 S4R3F8 94 aa1.01□□□□□ -2.25
CD44-223ENST00000526553 HMCN1Q96RW7 5635 aa1□□□□□ -2.25
CD44-223ENST00000526553 KRTAP19-2Q3LHN2 52 aa1□□□□□ -2.25
CD44-223ENST00000526553 TNP1P09430 55 aa0.99□□□□□ -2.25
CD44-223ENST00000526553 KRTAP20-1Q3LI63 56 aa0.99□□□□□ -2.25
CD44-223ENST00000526553 MDN1Q9NU22 5596 aa0.96□□□□□ -2.26
CD44-223ENST00000526553 KMT2DO14686 5537 aa0.95□□□□□ -2.26
CD44-223ENST00000526553 MT2AP02795 61 aa0.95□□□□□ -2.26
CD44-223ENST00000526553 MT1FP04733 61 aa0.95□□□□□ -2.26
CD44-223ENST00000526553 GPR98Q8WXG9 6306 aa0.95□□□□□ -2.26
CD44-223ENST00000526553 KRTAP19-6Q3LI70 58 aa0.94□□□□□ -2.26
CD44-223ENST00000526553 C10orf95Q9H7T3 257 aa0.93□□□□□ -2.26
CD44-223ENST00000526553 KRTAP2-3P0C7H8 128 aa0.92□□□□□ -2.26
CD44-223ENST00000526553 KRTAP2-4Q9BYR9 128 aa0.92□□□□□ -2.26
CD44-223ENST00000526553 SPRR2EP22531 72 aa0.89□□□□□ -2.27
CD44-223ENST00000526553 SPRR2BP35325 72 aa0.89□□□□□ -2.27
CD44-223ENST00000526553 SPRR2AP35326 72 aa0.89□□□□□ -2.27
CD44-223ENST00000526553 KRTAP2-1Q9BYU5 128 aa0.88□□□□□ -2.27
CD44-223ENST00000526553 SPRR2FQ96RM1 72 aa0.87□□□□□ -2.27
CD44-223ENST00000526553 AHNAK2Q8IVF2 5795 aa0.87□□□□□ -2.27
CD44-223ENST00000526553 SPRR2DP22532 72 aa0.86□□□□□ -2.27
CD44-223ENST00000526553 DSTQ03001 7570 aaKnown RBP0.84□□□□□ -2.28
CD44-223ENST00000526553 MT1BP07438 61 aa0.83□□□□□ -2.28
CD44-223ENST00000526553 KRTAP19-3Q7Z4W3 81 aa0.83□□□□□ -2.28
CD44-223ENST00000526553 KRTAP8-1Q8IUC2 63 aa0.83□□□□□ -2.28
CD44-223ENST00000526553 KRTAP19-8Q3LI54 63 aa0.81□□□□□ -2.28
CD44-223ENST00000526553 SPRR2GQ9BYE4 73 aa0.79□□□□□ -2.28
CD44-223ENST00000526553 MT4P47944 62 aa0.77□□□□□ -2.29
CD44-223ENST00000526553 AHNAKQ09666 5890 aaKnown RBP0.77□□□□□ -2.29
CD44-223ENST00000526553 MT1XP80297 61 aa0.75□□□□□ -2.29
CD44-223ENST00000526553 MUC5BQ9HC84 5762 aaPredicted RBP0.71□□□□□ -2.3
CD44-223ENST00000526553 MUC5ACP98088 5654 aa0.69□□□□□ -2.3
CD44-223ENST00000526553 MT1EP04732 61 aa0.67□□□□□ -2.3
CD44-223ENST00000526553 MT1GP13640 62 aa0.67□□□□□ -2.3
CD44-223ENST00000526553 KRTAP19-7Q3SYF9 63 aa0.67□□□□□ -2.3
CD44-223ENST00000526553 KRTAP19-5Q3LI72 72 aa0.66□□□□□ -2.3
CD44-223ENST00000526553 MT1MQ8N339 61 aa0.66□□□□□ -2.3
CD44-223ENST00000526553 KRTAP20-2Q3LI61 65 aa0.65□□□□□ -2.31
CD44-223ENST00000526553 MT1AP04731 61 aa0.64□□□□□ -2.31
CD44-223ENST00000526553 MT1LQ93083 61 aa0.63□□□□□ -2.31
CD44-223ENST00000526553 SYNE1Q8NF91 8797 aaKnown RBP0.62□□□□□ -2.31
CD44-223ENST00000526553 PRM1P04553 51 aa0.56□□□□□ -2.32
CD44-223ENST00000526553 KRTAP21-1Q3LI58 79 aa0.56□□□□□ -2.32
CD44-223ENST00000526553 KRTAP6-1Q3LI64 71 aa0.55□□□□□ -2.32
CD44-223ENST00000526553 KRTAP6-2Q3LI66 62 aa0.55□□□□□ -2.32
CD44-223ENST00000526553 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 46.3 ms