RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	SPTSSB	Q8NFR3	76 aa		3.52	□□□□□ -1.85
CLDND1-231	ENST00000515620	KRTAP12-4	P60329	112 aa		3.51	□□□□□ -1.85
CLDND1-231	ENST00000515620	ETDB	Q3ZM63	59 aa		3.51	□□□□□ -1.85
CLDND1-231	ENST00000515620	SCGB1A1	P11684	91 aa		3.5	□□□□□ -1.85
CLDND1-231	ENST00000515620	LCE1E	Q5T753	118 aa		3.49	□□□□□ -1.85
CLDND1-231	ENST00000515620	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.49	□□□□□ -1.85
CLDND1-231	ENST00000515620	C10orf95	Q9H7T3	257 aa		3.48	□□□□□ -1.85
CLDND1-231	ENST00000515620	AHNAK	Q09666	5890 aa	Known RBP	3.47	□□□□□ -1.85
CLDND1-231	ENST00000515620	MUC5AC	P98088	5654 aa		3.47	□□□□□ -1.85
CLDND1-231	ENST00000515620		H3BPC8	53 aa		3.46	□□□□□ -1.86
CLDND1-231	ENST00000515620	ACYP2	P14621	99 aa		3.46	□□□□□ -1.86
CLDND1-231	ENST00000515620		F8W1H4	67 aa		3.43	□□□□□ -1.86
CLDND1-231	ENST00000515620	LCE3A	Q5TA76	89 aa		3.43	□□□□□ -1.86
CLDND1-231	ENST00000515620	CHKB-CPT1B	H3BT56	60 aa		3.42	□□□□□ -1.86
CLDND1-231	ENST00000515620	COL5A1-AS1	Q5SY13	56 aa		3.41	□□□□□ -1.86
CLDND1-231	ENST00000515620	KRTAP5-11	Q6L8G4	156 aa		3.4	□□□□□ -1.87
CLDND1-231	ENST00000515620	GTF2H5	Q6ZYL4	71 aa		3.4	□□□□□ -1.87
CLDND1-231	ENST00000515620	LUZP6	Q538Z0	58 aa		3.39	□□□□□ -1.87
CLDND1-231	ENST00000515620	KRTAP5-8	O75690	187 aa		3.38	□□□□□ -1.87
CLDND1-231	ENST00000515620	SPINT4	Q6UDR6	99 aa		3.38	□□□□□ -1.87
CLDND1-231	ENST00000515620	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.36	□□□□□ -1.87
CLDND1-231	ENST00000515620	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.36	□□□□□ -1.87
CLDND1-231	ENST00000515620	LINC00643	Q86TS7	51 aa		3.35	□□□□□ -1.87
CLDND1-231	ENST00000515620	SYNE1	Q8NF91	8797 aa	Known RBP	3.32	□□□□□ -1.88
CLDND1-231	ENST00000515620		K7ERS5	55 aa		3.31	□□□□□ -1.88
CLDND1-231	ENST00000515620	KRTAP12-1	P59990	96 aa		3.31	□□□□□ -1.88
CLDND1-231	ENST00000515620	RPS28	P62857	69 aa	Known RBP	3.3	□□□□□ -1.88
CLDND1-231	ENST00000515620	SPATA8	Q6RVD6	105 aa		3.3	□□□□□ -1.88
CLDND1-231	ENST00000515620	KRTAP5-2	Q701N4	177 aa		3.29	□□□□□ -1.88
CLDND1-231	ENST00000515620	KRTAP12-3	P60328	96 aa		3.28	□□□□□ -1.88
CLDND1-231	ENST00000515620	TNP1	P09430	55 aa		3.27	□□□□□ -1.89
CLDND1-231	ENST00000515620		A0A1B0GV90	55 aa		3.25	□□□□□ -1.89
CLDND1-231	ENST00000515620		A6NED7	52 aa		3.24	□□□□□ -1.89
CLDND1-231	ENST00000515620	KTN1-AS1	Q86SY8	53 aa		3.23	□□□□□ -1.89
CLDND1-231	ENST00000515620	SPANXA2-OT1	Q8N9U9	137 aa		3.22	□□□□□ -1.89
CLDND1-231	ENST00000515620	LCE1F	Q5T754	118 aa		3.19	□□□□□ -1.9
CLDND1-231	ENST00000515620	SERP1	Q9Y6X1	66 aa		3.18	□□□□□ -1.9
CLDND1-231	ENST00000515620		A0A1B0GU33	70 aa		3.17	□□□□□ -1.9
CLDND1-231	ENST00000515620	KRTAP6-1	Q3LI64	71 aa		3.14	□□□□□ -1.91
CLDND1-231	ENST00000515620	MT1A	P04731	61 aa		3.11	□□□□□ -1.91
CLDND1-231	ENST00000515620	OBSCN	Q5VST9	7968 aa		3.11	□□□□□ -1.91
CLDND1-231	ENST00000515620	SNURF	Q9Y675	71 aa		3.1	□□□□□ -1.91
CLDND1-231	ENST00000515620		A8MU10	97 aa		3.09	□□□□□ -1.91
CLDND1-231	ENST00000515620		K7ERU9	68 aa		3.09	□□□□□ -1.91
CLDND1-231	ENST00000515620	KRTAP6-2	Q3LI66	62 aa		3.09	□□□□□ -1.91
CLDND1-231	ENST00000515620		J3QR89	54 aa		3.08	□□□□□ -1.92
CLDND1-231	ENST00000515620	COA5	Q86WW8	74 aa		3.07	□□□□□ -1.92
CLDND1-231	ENST00000515620	KRTAP9-6	A8MVA2	160 aa		3.06	□□□□□ -1.92
CLDND1-231	ENST00000515620	BRK1	Q8WUW1	75 aa		3.06	□□□□□ -1.92
CLDND1-231	ENST00000515620	KRTAP5-1	Q6L8H4	278 aa		3.03	□□□□□ -1.92
CLDND1-231	ENST00000515620	LCE3C	Q5T5A8	94 aa		3	□□□□□ -1.93
CLDND1-231	ENST00000515620	KRTAP25-1	Q3LHN0	102 aa		2.99	□□□□□ -1.93
CLDND1-231	ENST00000515620	SERP2	Q8N6R1	65 aa		2.95	□□□□□ -1.94
CLDND1-231	ENST00000515620		A0A1B0GU69	56 aa		2.92	□□□□□ -1.94
CLDND1-231	ENST00000515620	CCDC179	H3BU77	68 aa		2.85	□□□□□ -1.95
CLDND1-231	ENST00000515620	ROMO1	P60602	79 aa		2.84	□□□□□ -1.95
CLDND1-231	ENST00000515620	TMEM258	P61165	79 aa		2.84	□□□□□ -1.95
CLDND1-231	ENST00000515620	KRTAP4-4	Q9BYR3	166 aa		2.75	□□□□□ -1.97
CLDND1-231	ENST00000515620	PRR15L	Q9BU68	103 aa		2.74	□□□□□ -1.97
CLDND1-231	ENST00000515620	LCE3E	Q5T5B0	92 aa		2.72	□□□□□ -1.97
CLDND1-231	ENST00000515620		H7BZZ5	65 aa		2.69	□□□□□ -1.98
CLDND1-231	ENST00000515620	MIR22HG	Q0VDD5	57 aa		2.69	□□□□□ -1.98
CLDND1-231	ENST00000515620		Q1T7F1	81 aa		2.65	□□□□□ -1.99
CLDND1-231	ENST00000515620	LCE1B	Q5T7P3	118 aa		2.65	□□□□□ -1.99
CLDND1-231	ENST00000515620	COX7C	P15954	63 aa		2.58	□□□□□ -2
CLDND1-231	ENST00000515620	UQCR11	O14957	56 aa		2.57	□□□□□ -2
CLDND1-231	ENST00000515620	ATP5E	P56381	51 aa	Predicted RBP	2.55	□□□□□ -2
CLDND1-231	ENST00000515620	LCE1C	Q5T751	118 aa		2.53	□□□□□ -2
CLDND1-231	ENST00000515620	LINC01558	Q9Y6Z2	57 aa		2.53	□□□□□ -2
CLDND1-231	ENST00000515620	CDC42SE1	Q9NRR8	79 aa		2.5	□□□□□ -2.01
CLDND1-231	ENST00000515620	PHGR1	C9JFL3	82 aa		2.41	□□□□□ -2.02
CLDND1-231	ENST00000515620	INE1	O15225	51 aa		2.4	□□□□□ -2.03
CLDND1-231	ENST00000515620	LCE3D	Q9BYE3	92 aa		2.22	□□□□□ -2.05
CLDND1-231	ENST00000515620	KRTAP21-2	Q3LI59	83 aa		2.06	□□□□□ -2.08
CLDND1-231	ENST00000515620	MUC19	Q7Z5P9	8384 aa		1.94	□□□□□ -2.1
CLDND1-231	ENST00000515620	KRTAP21-1	Q3LI58	79 aa		1.82	□□□□□ -2.12
CLDND1-231	ENST00000515620	MUC16	Q8WXI7	14507 aa		1.38	□□□□□ -2.19
CLDND1-231	ENST00000515620	PRM1	P04553	51 aa		1.14	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 56.5 ms