RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 LCE5AQ5TCM9 118 aa4.22□□□□□ -1.73
VCAN-212ENST00000515397 KRTAP19-3Q7Z4W3 81 aa4.22□□□□□ -1.73
VCAN-212ENST00000515397 C10orf95Q9H7T3 257 aa4.22□□□□□ -1.73
VCAN-212ENST00000515397 GPR98Q8WXG9 6306 aa4.21□□□□□ -1.73
VCAN-212ENST00000515397 PRR15LQ9BU68 103 aa4.2□□□□□ -1.74
VCAN-212ENST00000515397 LINC01558Q9Y6Z2 57 aa4.2□□□□□ -1.74
VCAN-212ENST00000515397 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
VCAN-212ENST00000515397 LCE3AQ5TA76 89 aa4.16□□□□□ -1.74
VCAN-212ENST00000515397 TNP1P09430 55 aa4.13□□□□□ -1.75
VCAN-212ENST00000515397 PCP4P48539 62 aa4.11□□□□□ -1.75
VCAN-212ENST00000515397 MT1GP13640 62 aa4.1□□□□□ -1.75
VCAN-212ENST00000515397 MT1LQ93083 61 aa4.1□□□□□ -1.75
VCAN-212ENST00000515397 UQCR11O14957 56 aa4.08□□□□□ -1.76
VCAN-212ENST00000515397 MT1MQ8N339 61 aa4.07□□□□□ -1.76
VCAN-212ENST00000515397 KRTAP4-3Q9BYR4 195 aa4.06□□□□□ -1.76
VCAN-212ENST00000515397 V9GYY9 64 aa4.05□□□□□ -1.76
VCAN-212ENST00000515397 PP632Q6XCG6 107 aa4.04□□□□□ -1.76
VCAN-212ENST00000515397 Q1T7F1 81 aa4.03□□□□□ -1.76
VCAN-212ENST00000515397 KRTAP23-1A1A580 65 aa4.02□□□□□ -1.77
VCAN-212ENST00000515397 RPS28P62857 69 aaKnown RBP4.02□□□□□ -1.77
VCAN-212ENST00000515397 MIR22HGQ0VDD5 57 aa4.02□□□□□ -1.77
VCAN-212ENST00000515397 PSPHP1O15172 72 aa4.01□□□□□ -1.77
VCAN-212ENST00000515397 KRTAP12-3P60328 96 aa3.97□□□□□ -1.77
VCAN-212ENST00000515397 SVIPQ8NHG7 77 aa3.96□□□□□ -1.78
VCAN-212ENST00000515397 MT4P47944 62 aa3.93□□□□□ -1.78
VCAN-212ENST00000515397 K7ERS5 55 aa3.89□□□□□ -1.79
VCAN-212ENST00000515397 KRTAP25-1Q3LHN0 102 aa3.88□□□□□ -1.79
VCAN-212ENST00000515397 HMCN1Q96RW7 5635 aa3.86□□□□□ -1.79
VCAN-212ENST00000515397 KRTAP5-10Q6L8G5 202 aa3.84□□□□□ -1.79
VCAN-212ENST00000515397 A6NED7 52 aa3.83□□□□□ -1.8
VCAN-212ENST00000515397 KRTAP5-4Q6L8H1 288 aa3.82□□□□□ -1.8
VCAN-212ENST00000515397 AHNAK2Q8IVF2 5795 aa3.79□□□□□ -1.8
VCAN-212ENST00000515397 KRTAP15-1Q3LI76 137 aa3.74□□□□□ -1.81
VCAN-212ENST00000515397 KRTAP5-7Q6L8G8 165 aa3.73□□□□□ -1.81
VCAN-212ENST00000515397 CDC42SE1Q9NRR8 79 aa3.72□□□□□ -1.81
VCAN-212ENST00000515397 SPRR5A0A1B0GTR4 108 aa3.71□□□□□ -1.82
VCAN-212ENST00000515397 KRTAP5-5Q701N2 237 aaPredicted RBP3.7□□□□□ -1.82
VCAN-212ENST00000515397 ROMO1P60602 79 aa3.67□□□□□ -1.82
VCAN-212ENST00000515397 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
VCAN-212ENST00000515397 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
VCAN-212ENST00000515397 KRTAP12-4P60329 112 aa3.6□□□□□ -1.83
VCAN-212ENST00000515397 SYNE1Q8NF91 8797 aaKnown RBP3.57□□□□□ -1.84
VCAN-212ENST00000515397 KRTAP9-6A8MVA2 160 aa3.5□□□□□ -1.85
VCAN-212ENST00000515397 KRTAP6-1Q3LI64 71 aa3.49□□□□□ -1.85
VCAN-212ENST00000515397 BRK1Q8WUW1 75 aa3.49□□□□□ -1.85
VCAN-212ENST00000515397 MT1AP04731 61 aa3.46□□□□□ -1.86
VCAN-212ENST00000515397 A0A0A0MQY5 61 aa3.38□□□□□ -1.87
VCAN-212ENST00000515397 KRTAP5-2Q701N4 177 aa3.35□□□□□ -1.87
VCAN-212ENST00000515397 KRTAP6-2Q3LI66 62 aa3.33□□□□□ -1.88
VCAN-212ENST00000515397 PMAIP1Q13794 54 aa3.32□□□□□ -1.88
VCAN-212ENST00000515397 PRO0628Q9UI54 55 aa3.26□□□□□ -1.89
VCAN-212ENST00000515397 KRTAP5-8O75690 187 aa3.22□□□□□ -1.89
VCAN-212ENST00000515397 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
VCAN-212ENST00000515397 MUC5ACP98088 5654 aa3.19□□□□□ -1.9
VCAN-212ENST00000515397 OBSCNQ5VST9 7968 aa3.18□□□□□ -1.9
VCAN-212ENST00000515397 AHNAKQ09666 5890 aaKnown RBP3.17□□□□□ -1.9
VCAN-212ENST00000515397 MT3P25713 68 aa3.16□□□□□ -1.9
VCAN-212ENST00000515397 MUC5BQ9HC84 5762 aaPredicted RBP3.12□□□□□ -1.91
VCAN-212ENST00000515397 PRAC1Q96KF2 57 aa3.1□□□□□ -1.91
VCAN-212ENST00000515397 KTN1-AS1Q86SY8 53 aa3.06□□□□□ -1.92
VCAN-212ENST00000515397 KRTAP5-11Q6L8G4 156 aa3.03□□□□□ -1.92
VCAN-212ENST00000515397 KRTAP5-1Q6L8H4 278 aa3.03□□□□□ -1.92
VCAN-212ENST00000515397 LCE1EQ5T753 118 aa2.85□□□□□ -1.95
VCAN-212ENST00000515397 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
VCAN-212ENST00000515397 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
VCAN-212ENST00000515397 LCE1CQ5T751 118 aa2.66□□□□□ -1.98
VCAN-212ENST00000515397 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
VCAN-212ENST00000515397 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
VCAN-212ENST00000515397 LCE3DQ9BYE3 92 aa2.64□□□□□ -1.99
VCAN-212ENST00000515397 LUZP6Q538Z0 58 aa2.63□□□□□ -1.99
VCAN-212ENST00000515397 LCE3EQ5T5B0 92 aa2.48□□□□□ -2.01
VCAN-212ENST00000515397 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
VCAN-212ENST00000515397 KRTAP21-2Q3LI59 83 aa2.28□□□□□ -2.04
VCAN-212ENST00000515397 MUC19Q7Z5P9 8384 aa1.95□□□□□ -2.1
VCAN-212ENST00000515397 INE1O15225 51 aa1.92□□□□□ -2.1
VCAN-212ENST00000515397 PRM1P04553 51 aa1.91□□□□□ -2.1
VCAN-212ENST00000515397 KRTAP21-1Q3LI58 79 aa1.71□□□□□ -2.14
VCAN-212ENST00000515397 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 67.4 ms