RNA–Protein interactions for RNA: ENST00000515056.5

APBB3-221, Transcript of amyloid beta precursor protein binding family B member 3, human

TSL 2

Gene APBB3, Length 2,064 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APBB3-221	ENST00000515056	KRTAP19-5	Q3LI72	72 aa		5.38	□□□□□ -1.55
APBB3-221	ENST00000515056	KRTAP5-9	P26371	169 aa		5.36	□□□□□ -1.55
APBB3-221	ENST00000515056	MUC12	Q9UKN1	5478 aa		5.34	□□□□□ -1.55
APBB3-221	ENST00000515056	SPRR2F	Q96RM1	72 aa		5.32	□□□□□ -1.56
APBB3-221	ENST00000515056	LCE3C	Q5T5A8	94 aa		5.29	□□□□□ -1.56
APBB3-221	ENST00000515056	MDN1	Q9NU22	5596 aa		5.25	□□□□□ -1.57
APBB3-221	ENST00000515056	KRTAP19-7	Q3SYF9	63 aa		5.25	□□□□□ -1.57
APBB3-221	ENST00000515056	KRTAP19-4	Q3LI73	84 aa		5.24	□□□□□ -1.57
APBB3-221	ENST00000515056	MT1E	P04732	61 aa		5.16	□□□□□ -1.58
APBB3-221	ENST00000515056	LCE1A	Q5T7P2	110 aa		5.12	□□□□□ -1.59
APBB3-221	ENST00000515056	SPRR2E	P22531	72 aa		5.12	□□□□□ -1.59
APBB3-221	ENST00000515056	SPRR2B	P35325	72 aa		5.12	□□□□□ -1.59
APBB3-221	ENST00000515056	SPRR2A	P35326	72 aa		5.12	□□□□□ -1.59
APBB3-221	ENST00000515056	KRTAP2-3	P0C7H8	128 aa		5.09	□□□□□ -1.59
APBB3-221	ENST00000515056	KRTAP2-4	Q9BYR9	128 aa		5.09	□□□□□ -1.59
APBB3-221	ENST00000515056	KRTAP2-1	Q9BYU5	128 aa		5.09	□□□□□ -1.59
APBB3-221	ENST00000515056	NEB	P20929	6669 aa		5.09	□□□□□ -1.59
APBB3-221	ENST00000515056	MT1L	Q93083	61 aa		5.04	□□□□□ -1.6
APBB3-221	ENST00000515056	KRTAP19-3	Q7Z4W3	81 aa		5.03	□□□□□ -1.6
APBB3-221	ENST00000515056	KRTAP9-6	A8MVA2	160 aa		5.03	□□□□□ -1.6
APBB3-221	ENST00000515056	LCE5A	Q5TCM9	118 aa		5	□□□□□ -1.61
APBB3-221	ENST00000515056	MT1G	P13640	62 aa		4.98	□□□□□ -1.61
APBB3-221	ENST00000515056	KRTAP4-7	Q9BYR0	210 aa		4.95	□□□□□ -1.62
APBB3-221	ENST00000515056	SPRR2D	P22532	72 aa		4.93	□□□□□ -1.62
APBB3-221	ENST00000515056	DST	Q03001	7570 aa	Known RBP	4.9	□□□□□ -1.63
APBB3-221	ENST00000515056	MT1M	Q8N339	61 aa		4.88	□□□□□ -1.63
APBB3-221	ENST00000515056	KRTAP20-1	Q3LI63	56 aa		4.81	□□□□□ -1.64
APBB3-221	ENST00000515056	KRTAP4-3	Q9BYR4	195 aa		4.79	□□□□□ -1.64
APBB3-221	ENST00000515056	LCE3B	Q5TA77	95 aa		4.77	□□□□□ -1.65
APBB3-221	ENST00000515056	KRTAP2-2	Q9BYT5	123 aa		4.69	□□□□□ -1.66
APBB3-221	ENST00000515056	LOC100996750	A0A140TA64	210 aa		4.62	□□□□□ -1.67
APBB3-221	ENST00000515056	KRTAP12-4	P60329	112 aa		4.55	□□□□□ -1.68
APBB3-221	ENST00000515056	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.44	□□□□□ -1.7
APBB3-221	ENST00000515056	KRTAP5-4	Q6L8H1	288 aa		4.4	□□□□□ -1.71
APBB3-221	ENST00000515056	LCE4A	Q5TA78	99 aa		4.39	□□□□□ -1.71
APBB3-221	ENST00000515056	KRTAP4-9	Q9BYQ8	210 aa		4.36	□□□□□ -1.71
APBB3-221	ENST00000515056	MT4	P47944	62 aa		4.31	□□□□□ -1.72
APBB3-221	ENST00000515056	LCE1D	Q5T752	114 aa		4.29	□□□□□ -1.72
APBB3-221	ENST00000515056	SYNE1	Q8NF91	8797 aa	Known RBP	4.28	□□□□□ -1.72
APBB3-221	ENST00000515056	MT1A	P04731	61 aa		4.28	□□□□□ -1.72
APBB3-221	ENST00000515056	KRTAP4-6	Q9BYQ5	205 aa		4.25	□□□□□ -1.73
APBB3-221	ENST00000515056	KRTAP6-1	Q3LI64	71 aa		4.24	□□□□□ -1.73
APBB3-221	ENST00000515056	HMCN1	Q96RW7	5635 aa		4.24	□□□□□ -1.73
APBB3-221	ENST00000515056	KRTAP20-2	Q3LI61	65 aa		4.13	□□□□□ -1.75
APBB3-221	ENST00000515056	PRM1	P04553	51 aa		4.09	□□□□□ -1.76
APBB3-221	ENST00000515056	KRTAP9-4	Q9BYQ2	154 aa		4.09	□□□□□ -1.76
APBB3-221	ENST00000515056	LCE3E	Q5T5B0	92 aa		4.06	□□□□□ -1.76
APBB3-221	ENST00000515056	LCE3D	Q9BYE3	92 aa		4.06	□□□□□ -1.76
APBB3-221	ENST00000515056	KRTAP5-3	Q6L8H2	238 aa		3.99	□□□□□ -1.77
APBB3-221	ENST00000515056	KRTAP6-2	Q3LI66	62 aa		3.96	□□□□□ -1.78
APBB3-221	ENST00000515056	KRTAP5-2	Q701N4	177 aa		3.93	□□□□□ -1.78
APBB3-221	ENST00000515056	MT3	P25713	68 aa		3.88	□□□□□ -1.79
APBB3-221	ENST00000515056	AHNAK2	Q8IVF2	5795 aa		3.88	□□□□□ -1.79
APBB3-221	ENST00000515056	OBSCN	Q5VST9	7968 aa		3.81	□□□□□ -1.8
APBB3-221	ENST00000515056	KRTAP5-10	Q6L8G5	202 aa		3.75	□□□□□ -1.81
APBB3-221	ENST00000515056	GPR98	Q8WXG9	6306 aa		3.75	□□□□□ -1.81
APBB3-221	ENST00000515056	KRTAP4-11	Q9BYQ6	195 aa		3.67	□□□□□ -1.82
APBB3-221	ENST00000515056	KRTAP5-8	O75690	187 aa		3.53	□□□□□ -1.84
APBB3-221	ENST00000515056	KRTAP5-7	Q6L8G8	165 aa		3.53	□□□□□ -1.84
APBB3-221	ENST00000515056	LCE1E	Q5T753	118 aa		3.49	□□□□□ -1.85
APBB3-221	ENST00000515056	KRTAP5-1	Q6L8H4	278 aa		3.46	□□□□□ -1.86
APBB3-221	ENST00000515056	MUC5AC	P98088	5654 aa		3.36	□□□□□ -1.87
APBB3-221	ENST00000515056	KRTAP9-9	Q9BYP9	154 aa		3.26	□□□□□ -1.89
APBB3-221	ENST00000515056	LCE1B	Q5T7P3	118 aa		3.24	□□□□□ -1.89
APBB3-221	ENST00000515056	KRTAP4-2	Q9BYR5	136 aa		3.23	□□□□□ -1.89
APBB3-221	ENST00000515056	LCE1C	Q5T751	118 aa		3.21	□□□□□ -1.89
APBB3-221	ENST00000515056	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.17	□□□□□ -1.9
APBB3-221	ENST00000515056	AHNAK	Q09666	5890 aa	Known RBP	3.04	□□□□□ -1.92
APBB3-221	ENST00000515056	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.97	□□□□□ -1.93
APBB3-221	ENST00000515056	KRTAP5-11	Q6L8G4	156 aa		2.86	□□□□□ -1.95
APBB3-221	ENST00000515056	LCE1F	Q5T754	118 aa		2.84	□□□□□ -1.95
APBB3-221	ENST00000515056	KRTAP4-12	Q9BQ66	201 aa		2.8	□□□□□ -1.96
APBB3-221	ENST00000515056	KRTAP21-2	Q3LI59	83 aa		2.78	□□□□□ -1.96
APBB3-221	ENST00000515056	KRTAP21-1	Q3LI58	79 aa		2.7	□□□□□ -1.98
APBB3-221	ENST00000515056	KRTAP4-4	Q9BYR3	166 aa		2.5	□□□□□ -2.01
APBB3-221	ENST00000515056	PHGR1	C9JFL3	82 aa		2.46	□□□□□ -2.01
APBB3-221	ENST00000515056	MUC19	Q7Z5P9	8384 aa		2.3	□□□□□ -2.04
APBB3-221	ENST00000515056	MUC16	Q8WXI7	14507 aa		1.58	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 79.5 ms