RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 KRTAP19-6Q3LI70 58 aa3.12□□□□□ -1.91
CLIP1-205ENST00000514271 MT1BP07438 61 aa3.04□□□□□ -1.92
CLIP1-205ENST00000514271 AHNAKQ09666 5890 aaKnown RBP3.02□□□□□ -1.93
CLIP1-205ENST00000514271 KRTAP10-5P60370 271 aa3.02□□□□□ -1.93
CLIP1-205ENST00000514271 KRTAP10-12P60413 245 aa3.02□□□□□ -1.93
CLIP1-205ENST00000514271 KRTAP8-1Q8IUC2 63 aa3□□□□□ -1.93
CLIP1-205ENST00000514271 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.97□□□□□ -1.93
CLIP1-205ENST00000514271 USH2AO75445 5202 aa2.96□□□□□ -1.94
CLIP1-205ENST00000514271 SSPOA2VEC9 5147 aa2.93□□□□□ -1.94
CLIP1-205ENST00000514271 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
CLIP1-205ENST00000514271 MT1XP80297 61 aa2.9□□□□□ -1.95
CLIP1-205ENST00000514271 LCE3AQ5TA76 89 aa2.89□□□□□ -1.95
CLIP1-205ENST00000514271 TNP1P09430 55 aa2.88□□□□□ -1.95
CLIP1-205ENST00000514271 KRTAP6-3Q3LI67 103 aa2.88□□□□□ -1.95
CLIP1-205ENST00000514271 KRTAP2-3P0C7H8 128 aa2.81□□□□□ -1.96
CLIP1-205ENST00000514271 KRTAP2-4Q9BYR9 128 aa2.81□□□□□ -1.96
CLIP1-205ENST00000514271 KRTAP2-1Q9BYU5 128 aa2.81□□□□□ -1.96
CLIP1-205ENST00000514271 FCGBPQ9Y6R7 5405 aaPredicted RBP2.81□□□□□ -1.96
CLIP1-205ENST00000514271 KRTAP5-9P26371 169 aa2.8□□□□□ -1.96
CLIP1-205ENST00000514271 KRTAP10-7P60409 375 aaPredicted RBP2.78□□□□□ -1.96
CLIP1-205ENST00000514271 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
CLIP1-205ENST00000514271 LCE1FQ5T754 118 aa2.74□□□□□ -1.97
CLIP1-205ENST00000514271 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
CLIP1-205ENST00000514271 KRTAP19-5Q3LI72 72 aa2.72□□□□□ -1.97
CLIP1-205ENST00000514271 KRTAP12-3P60328 96 aa2.69□□□□□ -1.98
CLIP1-205ENST00000514271 LCE1AQ5T7P2 110 aa2.68□□□□□ -1.98
CLIP1-205ENST00000514271 LCE3CQ5T5A8 94 aa2.67□□□□□ -1.98
CLIP1-205ENST00000514271 FSIP2Q5CZC0 6907 aa2.66□□□□□ -1.98
CLIP1-205ENST00000514271 SPRR2FQ96RM1 72 aa2.65□□□□□ -1.99
CLIP1-205ENST00000514271 LCE1EQ5T753 118 aa2.63□□□□□ -1.99
CLIP1-205ENST00000514271 KRTAP19-7Q3SYF9 63 aa2.62□□□□□ -1.99
CLIP1-205ENST00000514271 MACF1Q9UPN3 7388 aaKnown RBP2.62□□□□□ -1.99
CLIP1-205ENST00000514271 NEBP20929 6669 aa2.61□□□□□ -1.99
CLIP1-205ENST00000514271 SPRR2EP22531 72 aa2.61□□□□□ -1.99
CLIP1-205ENST00000514271 SPRR2BP35325 72 aa2.61□□□□□ -1.99
CLIP1-205ENST00000514271 SPRR2AP35326 72 aa2.61□□□□□ -1.99
CLIP1-205ENST00000514271 KRTAP20-1Q3LI63 56 aa2.6□□□□□ -1.99
CLIP1-205ENST00000514271 MT1EP04732 61 aa2.58□□□□□ -2
CLIP1-205ENST00000514271 MT1GP13640 62 aa2.55□□□□□ -2
CLIP1-205ENST00000514271 KRTAP19-3Q7Z4W3 81 aa2.55□□□□□ -2
CLIP1-205ENST00000514271 SPRR2DP22532 72 aa2.54□□□□□ -2
CLIP1-205ENST00000514271 KMT2DO14686 5537 aa2.53□□□□□ -2
CLIP1-205ENST00000514271 KRTAP5-4Q6L8H1 288 aa2.49□□□□□ -2.01
CLIP1-205ENST00000514271 MT1LQ93083 61 aa2.49□□□□□ -2.01
CLIP1-205ENST00000514271 SYNE2Q8WXH0 6885 aaKnown RBP2.49□□□□□ -2.01
CLIP1-205ENST00000514271 KRTAP5-1Q6L8H4 278 aa2.47□□□□□ -2.01
CLIP1-205ENST00000514271 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
CLIP1-205ENST00000514271 MT1MQ8N339 61 aa2.44□□□□□ -2.02
CLIP1-205ENST00000514271 MT3P25713 68 aa2.43□□□□□ -2.02
CLIP1-205ENST00000514271 KRTAP12-4P60329 112 aa2.41□□□□□ -2.02
CLIP1-205ENST00000514271 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
CLIP1-205ENST00000514271 MDN1Q9NU22 5596 aa2.38□□□□□ -2.03
CLIP1-205ENST00000514271 MUC12Q9UKN1 5478 aa2.38□□□□□ -2.03
CLIP1-205ENST00000514271 LCE3EQ5T5B0 92 aa2.37□□□□□ -2.03
CLIP1-205ENST00000514271 AHNAK2Q8IVF2 5795 aa2.35□□□□□ -2.03
CLIP1-205ENST00000514271 MT1AP04731 61 aa2.3□□□□□ -2.04
CLIP1-205ENST00000514271 KRTAP5-5Q701N2 237 aaPredicted RBP2.29□□□□□ -2.04
CLIP1-205ENST00000514271 LCE3DQ9BYE3 92 aa2.23□□□□□ -2.05
CLIP1-205ENST00000514271 KRTAP4-3Q9BYR4 195 aa2.21□□□□□ -2.06
CLIP1-205ENST00000514271 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
CLIP1-205ENST00000514271 KRTAP20-2Q3LI61 65 aa2.1□□□□□ -2.07
CLIP1-205ENST00000514271 MT4P47944 62 aa2.1□□□□□ -2.07
CLIP1-205ENST00000514271 KRTAP6-1Q3LI64 71 aa2.08□□□□□ -2.08
CLIP1-205ENST00000514271 KRTAP5-2Q701N4 177 aa2.08□□□□□ -2.08
CLIP1-205ENST00000514271 DSTQ03001 7570 aaKnown RBP1.97□□□□□ -2.09
CLIP1-205ENST00000514271 OBSCNQ5VST9 7968 aa1.96□□□□□ -2.1
CLIP1-205ENST00000514271 PRM1P04553 51 aa1.96□□□□□ -2.1
CLIP1-205ENST00000514271 MUC5ACP98088 5654 aa1.93□□□□□ -2.1
CLIP1-205ENST00000514271 KRTAP6-2Q3LI66 62 aa1.92□□□□□ -2.1
CLIP1-205ENST00000514271 SYNE1Q8NF91 8797 aaKnown RBP1.92□□□□□ -2.1
CLIP1-205ENST00000514271 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
CLIP1-205ENST00000514271 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
CLIP1-205ENST00000514271 LCE1CQ5T751 118 aa1.69□□□□□ -2.14
CLIP1-205ENST00000514271 LCE1BQ5T7P3 118 aa1.69□□□□□ -2.14
CLIP1-205ENST00000514271 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.17
CLIP1-205ENST00000514271 KRTAP21-2Q3LI59 83 aa1.48□□□□□ -2.17
CLIP1-205ENST00000514271 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
CLIP1-205ENST00000514271 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 155 ms