RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 LINC01558Q9Y6Z2 57 aa3.66□□□□□ -1.82
RNF4-221ENST00000513643 A8MU10 97 aa3.65□□□□□ -1.83
RNF4-221ENST00000513643 KRTAP2-2Q9BYT5 123 aa3.65□□□□□ -1.83
RNF4-221ENST00000513643 KRTAP2-1Q9BYU5 128 aa3.65□□□□□ -1.83
RNF4-221ENST00000513643 TMEM258P61165 79 aa3.64□□□□□ -1.83
RNF4-221ENST00000513643 MT1EP04732 61 aa3.63□□□□□ -1.83
RNF4-221ENST00000513643 KRTAP19-4Q3LI73 84 aa3.62□□□□□ -1.83
RNF4-221ENST00000513643 PRR15LQ9BU68 103 aa3.6□□□□□ -1.83
RNF4-221ENST00000513643 C10orf95Q9H7T3 257 aa3.59□□□□□ -1.83
RNF4-221ENST00000513643 KRTAP19-3Q7Z4W3 81 aa3.57□□□□□ -1.84
RNF4-221ENST00000513643 KRTAP19-5Q3LI72 72 aa3.56□□□□□ -1.84
RNF4-221ENST00000513643 DSTQ03001 7570 aaKnown RBP3.56□□□□□ -1.84
RNF4-221ENST00000513643 UQCR11O14957 56 aa3.51□□□□□ -1.85
RNF4-221ENST00000513643 TNP1P09430 55 aa3.5□□□□□ -1.85
RNF4-221ENST00000513643 MT1GP13640 62 aa3.5□□□□□ -1.85
RNF4-221ENST00000513643 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
RNF4-221ENST00000513643 MT1LQ93083 61 aa3.47□□□□□ -1.85
RNF4-221ENST00000513643 Q1T7F1 81 aa3.45□□□□□ -1.86
RNF4-221ENST00000513643 MIR22HGQ0VDD5 57 aa3.43□□□□□ -1.86
RNF4-221ENST00000513643 MT1MQ8N339 61 aa3.43□□□□□ -1.86
RNF4-221ENST00000513643 PP632Q6XCG6 107 aa3.41□□□□□ -1.86
RNF4-221ENST00000513643 PSPHP1O15172 72 aa3.4□□□□□ -1.87
RNF4-221ENST00000513643 KRTAP15-1Q3LI76 137 aa3.39□□□□□ -1.87
RNF4-221ENST00000513643 KRTAP12-3P60328 96 aa3.36□□□□□ -1.87
RNF4-221ENST00000513643 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
RNF4-221ENST00000513643 RPS28P62857 69 aaKnown RBP3.35□□□□□ -1.87
RNF4-221ENST00000513643 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
RNF4-221ENST00000513643 HMCN1Q96RW7 5635 aa3.34□□□□□ -1.87
RNF4-221ENST00000513643 PRO0628Q9UI54 55 aa3.34□□□□□ -1.87
RNF4-221ENST00000513643 GPR98Q8WXG9 6306 aa3.31□□□□□ -1.88
RNF4-221ENST00000513643 K7ERS5 55 aa3.3□□□□□ -1.88
RNF4-221ENST00000513643 KRTAP5-4Q6L8H1 288 aa3.3□□□□□ -1.88
RNF4-221ENST00000513643 PMAIP1Q13794 54 aa3.26□□□□□ -1.89
RNF4-221ENST00000513643 A6NED7 52 aa3.25□□□□□ -1.89
RNF4-221ENST00000513643 KRTAP5-5Q701N2 237 aaPredicted RBP3.21□□□□□ -1.9
RNF4-221ENST00000513643 AHNAK2Q8IVF2 5795 aa3.21□□□□□ -1.9
RNF4-221ENST00000513643 NDUFAF8A1L188 74 aa3.18□□□□□ -1.9
RNF4-221ENST00000513643 MT4P47944 62 aa3.18□□□□□ -1.9
RNF4-221ENST00000513643 CDC42SE1Q9NRR8 79 aa3.16□□□□□ -1.9
RNF4-221ENST00000513643 ROMO1P60602 79 aa3.15□□□□□ -1.91
RNF4-221ENST00000513643 LCE3CQ5T5A8 94 aa3.12□□□□□ -1.91
RNF4-221ENST00000513643 LUZP6Q538Z0 58 aa3.1□□□□□ -1.91
RNF4-221ENST00000513643 SYNE1Q8NF91 8797 aaKnown RBP3.1□□□□□ -1.91
RNF4-221ENST00000513643 SPRR5A0A1B0GTR4 108 aa3.08□□□□□ -1.92
RNF4-221ENST00000513643 KRTAP20-2Q3LI61 65 aa3.06□□□□□ -1.92
RNF4-221ENST00000513643 KRTAP5-10Q6L8G5 202 aa3.04□□□□□ -1.92
RNF4-221ENST00000513643 KRTAP12-4P60329 112 aa3.02□□□□□ -1.93
RNF4-221ENST00000513643 KRTAP9-6A8MVA2 160 aa2.99□□□□□ -1.93
RNF4-221ENST00000513643 MT1AP04731 61 aa2.95□□□□□ -1.94
RNF4-221ENST00000513643 KTN1-AS1Q86SY8 53 aa2.94□□□□□ -1.94
RNF4-221ENST00000513643 KRTAP6-1Q3LI64 71 aa2.93□□□□□ -1.94
RNF4-221ENST00000513643 KRTAP5-7Q6L8G8 165 aa2.91□□□□□ -1.94
RNF4-221ENST00000513643 KRTAP5-2Q701N4 177 aa2.9□□□□□ -1.95
RNF4-221ENST00000513643 BRK1Q8WUW1 75 aa2.87□□□□□ -1.95
RNF4-221ENST00000513643 KRTAP6-2Q3LI66 62 aa2.77□□□□□ -1.97
RNF4-221ENST00000513643 KRTAP5-8O75690 187 aa2.71□□□□□ -1.98
RNF4-221ENST00000513643 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
RNF4-221ENST00000513643 OBSCNQ5VST9 7968 aa2.71□□□□□ -1.98
RNF4-221ENST00000513643 MT3P25713 68 aa2.68□□□□□ -1.98
RNF4-221ENST00000513643 MUC5BQ9HC84 5762 aaPredicted RBP2.66□□□□□ -1.98
RNF4-221ENST00000513643 AHNAKQ09666 5890 aaKnown RBP2.66□□□□□ -1.98
RNF4-221ENST00000513643 MUC5ACP98088 5654 aa2.65□□□□□ -1.99
RNF4-221ENST00000513643 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
RNF4-221ENST00000513643 LCE1FQ5T754 118 aa2.61□□□□□ -1.99
RNF4-221ENST00000513643 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
RNF4-221ENST00000513643 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
RNF4-221ENST00000513643 LCE1CQ5T751 118 aa2.32□□□□□ -2.04
RNF4-221ENST00000513643 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
RNF4-221ENST00000513643 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
RNF4-221ENST00000513643 LCE3DQ9BYE3 92 aa2.24□□□□□ -2.05
RNF4-221ENST00000513643 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
RNF4-221ENST00000513643 INE1O15225 51 aa2.15□□□□□ -2.07
RNF4-221ENST00000513643 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
RNF4-221ENST00000513643 PHGR1C9JFL3 82 aa1.8□□□□□ -2.12
RNF4-221ENST00000513643 MUC19Q7Z5P9 8384 aa1.66□□□□□ -2.14
RNF4-221ENST00000513643 PRM1P04553 51 aa1.6□□□□□ -2.15
RNF4-221ENST00000513643 KRTAP21-1Q3LI58 79 aa1.31□□□□□ -2.2
RNF4-221ENST00000513643 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 124.7 ms