RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 MT1MQ8N339 61 aa3.47□□□□□ -1.85
TCOF1-212ENST00000513538 A0A0D9SG42 100 aa3.46□□□□□ -1.86
TCOF1-212ENST00000513538 A0A1B0GU33 70 aa3.46□□□□□ -1.86
TCOF1-212ENST00000513538 KRTAP5-4Q6L8H1 288 aa3.46□□□□□ -1.86
TCOF1-212ENST00000513538 SPATA8Q6RVD6 105 aa3.46□□□□□ -1.86
TCOF1-212ENST00000513538 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.86
TCOF1-212ENST00000513538 KRTAP5-3Q6L8H2 238 aa3.45□□□□□ -1.86
TCOF1-212ENST00000513538 SPINT4Q6UDR6 99 aa3.44□□□□□ -1.86
TCOF1-212ENST00000513538 KRTAP12-1P59990 96 aa3.43□□□□□ -1.86
TCOF1-212ENST00000513538 KRTAP4-3Q9BYR4 195 aa3.43□□□□□ -1.86
TCOF1-212ENST00000513538 PP632Q6XCG6 107 aa3.42□□□□□ -1.86
TCOF1-212ENST00000513538 MT1LQ93083 61 aa3.42□□□□□ -1.86
TCOF1-212ENST00000513538 SMIM26A0A096LP01 95 aa3.4□□□□□ -1.87
TCOF1-212ENST00000513538 KRTAP5-7Q6L8G8 165 aa3.4□□□□□ -1.87
TCOF1-212ENST00000513538 A0A1B0GU69 56 aa3.39□□□□□ -1.87
TCOF1-212ENST00000513538 ANAPC13Q9BS18 74 aa3.35□□□□□ -1.87
TCOF1-212ENST00000513538 A8MU10 97 aa3.33□□□□□ -1.88
TCOF1-212ENST00000513538 PRR15LQ9BU68 103 aa3.32□□□□□ -1.88
TCOF1-212ENST00000513538 CCDC179H3BU77 68 aa3.31□□□□□ -1.88
TCOF1-212ENST00000513538 C10orf95Q9H7T3 257 aa3.3□□□□□ -1.88
TCOF1-212ENST00000513538 ATP5EP56381 51 aaPredicted RBP3.29□□□□□ -1.88
TCOF1-212ENST00000513538 TNP1P09430 55 aa3.28□□□□□ -1.88
TCOF1-212ENST00000513538 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
TCOF1-212ENST00000513538 LCE3AQ5TA76 89 aa3.27□□□□□ -1.89
TCOF1-212ENST00000513538 LINC01558Q9Y6Z2 57 aa3.25□□□□□ -1.89
TCOF1-212ENST00000513538 MT3P25713 68 aa3.24□□□□□ -1.89
TCOF1-212ENST00000513538 SPRR5A0A1B0GTR4 108 aa3.22□□□□□ -1.89
TCOF1-212ENST00000513538 KRTAP5-5Q701N2 237 aaPredicted RBP3.22□□□□□ -1.89
TCOF1-212ENST00000513538 UQCR11O14957 56 aa3.19□□□□□ -1.9
TCOF1-212ENST00000513538 TMEM258P61165 79 aa3.16□□□□□ -1.9
TCOF1-212ENST00000513538 RPS28P62857 69 aaKnown RBP3.13□□□□□ -1.91
TCOF1-212ENST00000513538 PRAC1Q96KF2 57 aa3.13□□□□□ -1.91
TCOF1-212ENST00000513538 K7ERS5 55 aa3.12□□□□□ -1.91
TCOF1-212ENST00000513538 KRTAP12-3P60328 96 aa3.12□□□□□ -1.91
TCOF1-212ENST00000513538 KRTAP12-4P60329 112 aa3.12□□□□□ -1.91
TCOF1-212ENST00000513538 SYNE1Q8NF91 8797 aaKnown RBP3.1□□□□□ -1.91
TCOF1-212ENST00000513538 MIR22HGQ0VDD5 57 aa3.09□□□□□ -1.91
TCOF1-212ENST00000513538 KRTAP25-1Q3LHN0 102 aa3.07□□□□□ -1.92
TCOF1-212ENST00000513538 V9GYY9 64 aa3.07□□□□□ -1.92
TCOF1-212ENST00000513538 Q1T7F1 81 aa3.01□□□□□ -1.93
TCOF1-212ENST00000513538 NDUFAF8A1L188 74 aa3□□□□□ -1.93
TCOF1-212ENST00000513538 PSPHP1O15172 72 aa2.99□□□□□ -1.93
TCOF1-212ENST00000513538 KRTAP5-2Q701N4 177 aa2.99□□□□□ -1.93
TCOF1-212ENST00000513538 KRTAP5-8O75690 187 aa2.97□□□□□ -1.93
TCOF1-212ENST00000513538 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
TCOF1-212ENST00000513538 PRO0628Q9UI54 55 aa2.93□□□□□ -1.94
TCOF1-212ENST00000513538 KRTAP6-1Q3LI64 71 aa2.92□□□□□ -1.94
TCOF1-212ENST00000513538 A6NED7 52 aa2.91□□□□□ -1.94
TCOF1-212ENST00000513538 MT1AP04731 61 aa2.9□□□□□ -1.95
TCOF1-212ENST00000513538 CDC42SE1Q9NRR8 79 aa2.9□□□□□ -1.95
TCOF1-212ENST00000513538 MUC5ACP98088 5654 aa2.9□□□□□ -1.95
TCOF1-212ENST00000513538 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
TCOF1-212ENST00000513538 LCE1EQ5T753 118 aa2.88□□□□□ -1.95
TCOF1-212ENST00000513538 AHNAKQ09666 5890 aaKnown RBP2.87□□□□□ -1.95
TCOF1-212ENST00000513538 ROMO1P60602 79 aa2.83□□□□□ -1.96
TCOF1-212ENST00000513538 KRTAP6-2Q3LI66 62 aa2.82□□□□□ -1.96
TCOF1-212ENST00000513538 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
TCOF1-212ENST00000513538 KRTAP5-11Q6L8G4 156 aa2.81□□□□□ -1.96
TCOF1-212ENST00000513538 BRK1Q8WUW1 75 aa2.8□□□□□ -1.96
TCOF1-212ENST00000513538 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
TCOF1-212ENST00000513538 PMAIP1Q13794 54 aa2.76□□□□□ -1.97
TCOF1-212ENST00000513538 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
TCOF1-212ENST00000513538 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
TCOF1-212ENST00000513538 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.66□□□□□ -1.98
TCOF1-212ENST00000513538 KTN1-AS1Q86SY8 53 aa2.66□□□□□ -1.98
TCOF1-212ENST00000513538 LCE3EQ5T5B0 92 aa2.51□□□□□ -2.01
TCOF1-212ENST00000513538 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
TCOF1-212ENST00000513538 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
TCOF1-212ENST00000513538 KRTAP4-4Q9BYR3 166 aa2.21□□□□□ -2.06
TCOF1-212ENST00000513538 LCE3DQ9BYE3 92 aa2.09□□□□□ -2.07
TCOF1-212ENST00000513538 LUZP6Q538Z0 58 aa2.04□□□□□ -2.08
TCOF1-212ENST00000513538 PHGR1C9JFL3 82 aa2.03□□□□□ -2.08
TCOF1-212ENST00000513538 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
TCOF1-212ENST00000513538 INE1O15225 51 aa1.84□□□□□ -2.11
TCOF1-212ENST00000513538 MUC19Q7Z5P9 8384 aa1.7□□□□□ -2.14
TCOF1-212ENST00000513538 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
TCOF1-212ENST00000513538 PRM1P04553 51 aa1.43□□□□□ -2.18
TCOF1-212ENST00000513538 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 33.7 ms