RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 KRTAP19-5Q3LI72 72 aa5.66□□□□□ -1.5
SCLT1-209ENST00000511426 KRTAP15-1Q3LI76 137 aa5.65□□□□□ -1.51
SCLT1-209ENST00000511426 KRTAP19-7Q3SYF9 63 aa5.62□□□□□ -1.51
SCLT1-209ENST00000511426 KRTAP19-4Q3LI73 84 aa5.59□□□□□ -1.52
SCLT1-209ENST00000511426 KRTAP9-7A8MTY7 169 aa5.57□□□□□ -1.52
SCLT1-209ENST00000511426 KMT2DO14686 5537 aa5.53□□□□□ -1.52
SCLT1-209ENST00000511426 MT1EP04732 61 aa5.53□□□□□ -1.52
SCLT1-209ENST00000511426 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
SCLT1-209ENST00000511426 SPRR5A0A1B0GTR4 108 aa5.43□□□□□ -1.54
SCLT1-209ENST00000511426 LCE5AQ5TCM9 118 aa5.42□□□□□ -1.54
SCLT1-209ENST00000511426 MACF1Q9UPN3 7388 aaKnown RBP5.42□□□□□ -1.54
SCLT1-209ENST00000511426 KRTAP5-9P26371 169 aa5.41□□□□□ -1.54
SCLT1-209ENST00000511426 MT1LQ93083 61 aa5.41□□□□□ -1.54
SCLT1-209ENST00000511426 SPRR2FQ96RM1 72 aa5.4□□□□□ -1.55
SCLT1-209ENST00000511426 A0A0A0MQY5 61 aa5.38□□□□□ -1.55
SCLT1-209ENST00000511426 LCE3CQ5T5A8 94 aa5.37□□□□□ -1.55
SCLT1-209ENST00000511426 KRTAP19-3Q7Z4W3 81 aa5.34□□□□□ -1.55
SCLT1-209ENST00000511426 MT1GP13640 62 aa5.32□□□□□ -1.56
SCLT1-209ENST00000511426 KRTAP6-3Q3LI67 103 aa5.31□□□□□ -1.56
SCLT1-209ENST00000511426 LUZP6Q538Z0 58 aa5.27□□□□□ -1.57
SCLT1-209ENST00000511426 SYNE2Q8WXH0 6885 aaKnown RBP5.2□□□□□ -1.58
SCLT1-209ENST00000511426 MT1MQ8N339 61 aa5.2□□□□□ -1.58
SCLT1-209ENST00000511426 LCE1AQ5T7P2 110 aa5.18□□□□□ -1.58
SCLT1-209ENST00000511426 SPRR2EP22531 72 aa5.13□□□□□ -1.59
SCLT1-209ENST00000511426 SPRR2BP35325 72 aa5.13□□□□□ -1.59
SCLT1-209ENST00000511426 SPRR2AP35326 72 aa5.13□□□□□ -1.59
SCLT1-209ENST00000511426 MUC12Q9UKN1 5478 aa5.13□□□□□ -1.59
SCLT1-209ENST00000511426 NDUFAF8A1L188 74 aa5.11□□□□□ -1.59
SCLT1-209ENST00000511426 KRTAP9-6A8MVA2 160 aa4.99□□□□□ -1.61
SCLT1-209ENST00000511426 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
SCLT1-209ENST00000511426 NEBP20929 6669 aa4.98□□□□□ -1.61
SCLT1-209ENST00000511426 MDN1Q9NU22 5596 aa4.95□□□□□ -1.62
SCLT1-209ENST00000511426 SPRR2DP22532 72 aa4.95□□□□□ -1.62
SCLT1-209ENST00000511426 KRTAP20-1Q3LI63 56 aa4.83□□□□□ -1.64
SCLT1-209ENST00000511426 KRTAP5-5Q701N2 237 aaPredicted RBP4.72□□□□□ -1.65
SCLT1-209ENST00000511426 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.66
SCLT1-209ENST00000511426 KRTAP2-3P0C7H8 128 aa4.7□□□□□ -1.66
SCLT1-209ENST00000511426 KRTAP2-4Q9BYR9 128 aa4.7□□□□□ -1.66
SCLT1-209ENST00000511426 KRTAP2-1Q9BYU5 128 aa4.7□□□□□ -1.66
SCLT1-209ENST00000511426 MT1AP04731 61 aa4.64□□□□□ -1.67
SCLT1-209ENST00000511426 KRTAP2-2Q9BYT5 123 aa4.54□□□□□ -1.68
SCLT1-209ENST00000511426 KRTAP5-4Q6L8H1 288 aa4.52□□□□□ -1.69
SCLT1-209ENST00000511426 KRTAP6-1Q3LI64 71 aa4.51□□□□□ -1.69
SCLT1-209ENST00000511426 GPR98Q8WXG9 6306 aa4.47□□□□□ -1.69
SCLT1-209ENST00000511426 INE1O15225 51 aa4.45□□□□□ -1.7
SCLT1-209ENST00000511426 KRTAP12-4P60329 112 aa4.41□□□□□ -1.7
SCLT1-209ENST00000511426 SYNE1Q8NF91 8797 aaKnown RBP4.29□□□□□ -1.72
SCLT1-209ENST00000511426 MT4P47944 62 aa4.23□□□□□ -1.73
SCLT1-209ENST00000511426 MT3P25713 68 aa4.22□□□□□ -1.73
SCLT1-209ENST00000511426 KRTAP20-2Q3LI61 65 aa4.19□□□□□ -1.74
SCLT1-209ENST00000511426 KRTAP6-2Q3LI66 62 aa4.16□□□□□ -1.74
SCLT1-209ENST00000511426 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.16□□□□□ -1.74
SCLT1-209ENST00000511426 KRTAP5-2Q701N4 177 aa4.1□□□□□ -1.75
SCLT1-209ENST00000511426 LCE3DQ9BYE3 92 aa4.04□□□□□ -1.76
SCLT1-209ENST00000511426 HMCN1Q96RW7 5635 aa4.03□□□□□ -1.77
SCLT1-209ENST00000511426 AHNAK2Q8IVF2 5795 aa3.94□□□□□ -1.78
SCLT1-209ENST00000511426 LCE3EQ5T5B0 92 aa3.94□□□□□ -1.78
SCLT1-209ENST00000511426 KRTAP5-11Q6L8G4 156 aa3.88□□□□□ -1.79
SCLT1-209ENST00000511426 KRTAP5-10Q6L8G5 202 aa3.81□□□□□ -1.8
SCLT1-209ENST00000511426 KRTAP5-7Q6L8G8 165 aa3.72□□□□□ -1.81
SCLT1-209ENST00000511426 OBSCNQ5VST9 7968 aa3.72□□□□□ -1.81
SCLT1-209ENST00000511426 LCE1EQ5T753 118 aa3.71□□□□□ -1.81
SCLT1-209ENST00000511426 KRTAP5-1Q6L8H4 278 aa3.56□□□□□ -1.84
SCLT1-209ENST00000511426 KRTAP5-8O75690 187 aa3.49□□□□□ -1.85
SCLT1-209ENST00000511426 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.85
SCLT1-209ENST00000511426 LCE1CQ5T751 118 aa3.43□□□□□ -1.86
SCLT1-209ENST00000511426 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
SCLT1-209ENST00000511426 AHNAKQ09666 5890 aaKnown RBP3.4□□□□□ -1.87
SCLT1-209ENST00000511426 PRM1P04553 51 aa3.38□□□□□ -1.87
SCLT1-209ENST00000511426 MUC5ACP98088 5654 aa3.3□□□□□ -1.88
SCLT1-209ENST00000511426 MUC5BQ9HC84 5762 aaPredicted RBP3.28□□□□□ -1.88
SCLT1-209ENST00000511426 KRTAP21-2Q3LI59 83 aa2.98□□□□□ -1.93
SCLT1-209ENST00000511426 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
SCLT1-209ENST00000511426 PHGR1C9JFL3 82 aa2.58□□□□□ -2
SCLT1-209ENST00000511426 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
SCLT1-209ENST00000511426 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
SCLT1-209ENST00000511426 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 5.9 ms