RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 KRTAP19-8Q3LI54 63 aa3.92□□□□□ -1.78
USP53-207ENST00000510852 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
USP53-207ENST00000510852 MT1BP07438 61 aa3.88□□□□□ -1.79
USP53-207ENST00000510852 LCE3CQ5T5A8 94 aa3.88□□□□□ -1.79
USP53-207ENST00000510852 FSIP2Q5CZC0 6907 aa3.86□□□□□ -1.79
USP53-207ENST00000510852 SSPOA2VEC9 5147 aa3.85□□□□□ -1.79
USP53-207ENST00000510852 KRTAP6-3Q3LI67 103 aa3.83□□□□□ -1.8
USP53-207ENST00000510852 KRTAP19-6Q3LI70 58 aa3.74□□□□□ -1.81
USP53-207ENST00000510852 MT1XP80297 61 aa3.73□□□□□ -1.81
USP53-207ENST00000510852 CRCT1Q9UGL9 99 aa3.72□□□□□ -1.81
USP53-207ENST00000510852 KRTAP10-5P60370 271 aa3.71□□□□□ -1.82
USP53-207ENST00000510852 FCGBPQ9Y6R7 5405 aaPredicted RBP3.7□□□□□ -1.82
USP53-207ENST00000510852 KRTAP12-4P60329 112 aa3.65□□□□□ -1.82
USP53-207ENST00000510852 KRTAP10-12P60413 245 aa3.63□□□□□ -1.83
USP53-207ENST00000510852 LCE3EQ5T5B0 92 aa3.6□□□□□ -1.83
USP53-207ENST00000510852 KRTAP10-7P60409 375 aaPredicted RBP3.59□□□□□ -1.83
USP53-207ENST00000510852 KMT2DO14686 5537 aa3.55□□□□□ -1.84
USP53-207ENST00000510852 TNP1P09430 55 aa3.54□□□□□ -1.84
USP53-207ENST00000510852 MACF1Q9UPN3 7388 aaKnown RBP3.54□□□□□ -1.84
USP53-207ENST00000510852 SYNE2Q8WXH0 6885 aaKnown RBP3.46□□□□□ -1.86
USP53-207ENST00000510852 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
USP53-207ENST00000510852 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
USP53-207ENST00000510852 KRTAP8-1Q8IUC2 63 aa3.4□□□□□ -1.86
USP53-207ENST00000510852 LCE3DQ9BYE3 92 aa3.38□□□□□ -1.87
USP53-207ENST00000510852 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
USP53-207ENST00000510852 MUC12Q9UKN1 5478 aa3.33□□□□□ -1.88
USP53-207ENST00000510852 KRTAP19-7Q3SYF9 63 aa3.32□□□□□ -1.88
USP53-207ENST00000510852 KRTAP5-9P26371 169 aa3.31□□□□□ -1.88
USP53-207ENST00000510852 SPRR2FQ96RM1 72 aa3.31□□□□□ -1.88
USP53-207ENST00000510852 MDN1Q9NU22 5596 aa3.3□□□□□ -1.88
USP53-207ENST00000510852 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
USP53-207ENST00000510852 MT1EP04732 61 aa3.28□□□□□ -1.89
USP53-207ENST00000510852 NEBP20929 6669 aa3.19□□□□□ -1.9
USP53-207ENST00000510852 MT1LQ93083 61 aa3.19□□□□□ -1.9
USP53-207ENST00000510852 SPRR2EP22531 72 aa3.18□□□□□ -1.9
USP53-207ENST00000510852 SPRR2BP35325 72 aa3.18□□□□□ -1.9
USP53-207ENST00000510852 SPRR2AP35326 72 aa3.18□□□□□ -1.9
USP53-207ENST00000510852 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
USP53-207ENST00000510852 KRTAP19-3Q7Z4W3 81 aa3.17□□□□□ -1.9
USP53-207ENST00000510852 MT1GP13640 62 aa3.13□□□□□ -1.91
USP53-207ENST00000510852 MT1MQ8N339 61 aa3.09□□□□□ -1.91
USP53-207ENST00000510852 SPRR2DP22532 72 aa3.07□□□□□ -1.92
USP53-207ENST00000510852 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
USP53-207ENST00000510852 DSTQ03001 7570 aaKnown RBP3.02□□□□□ -1.93
USP53-207ENST00000510852 KRTAP2-3P0C7H8 128 aa3.01□□□□□ -1.93
USP53-207ENST00000510852 KRTAP2-4Q9BYR9 128 aa3.01□□□□□ -1.93
USP53-207ENST00000510852 KRTAP2-1Q9BYU5 128 aa3.01□□□□□ -1.93
USP53-207ENST00000510852 KRTAP20-1Q3LI63 56 aa2.92□□□□□ -1.94
USP53-207ENST00000510852 KRTAP9-6A8MVA2 160 aa2.9□□□□□ -1.94
USP53-207ENST00000510852 KRTAP5-11Q6L8G4 156 aa2.9□□□□□ -1.94
USP53-207ENST00000510852 KRTAP5-5Q701N2 237 aaPredicted RBP2.8□□□□□ -1.96
USP53-207ENST00000510852 KRTAP5-4Q6L8H1 288 aa2.74□□□□□ -1.97
USP53-207ENST00000510852 PRM1P04553 51 aa2.73□□□□□ -1.97
USP53-207ENST00000510852 MT1AP04731 61 aa2.71□□□□□ -1.98
USP53-207ENST00000510852 SYNE1Q8NF91 8797 aaKnown RBP2.7□□□□□ -1.98
USP53-207ENST00000510852 KRTAP6-1Q3LI64 71 aa2.69□□□□□ -1.98
USP53-207ENST00000510852 MT4P47944 62 aa2.67□□□□□ -1.98
USP53-207ENST00000510852 KRTAP5-1Q6L8H4 278 aa2.65□□□□□ -1.99
USP53-207ENST00000510852 MUC5BQ9HC84 5762 aaPredicted RBP2.59□□□□□ -1.99
USP53-207ENST00000510852 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -2
USP53-207ENST00000510852 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
USP53-207ENST00000510852 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
USP53-207ENST00000510852 LCE1BQ5T7P3 118 aa2.52□□□□□ -2.01
USP53-207ENST00000510852 KRTAP6-2Q3LI66 62 aa2.5□□□□□ -2.01
USP53-207ENST00000510852 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
USP53-207ENST00000510852 AHNAK2Q8IVF2 5795 aa2.45□□□□□ -2.02
USP53-207ENST00000510852 GPR98Q8WXG9 6306 aa2.32□□□□□ -2.04
USP53-207ENST00000510852 OBSCNQ5VST9 7968 aa2.31□□□□□ -2.04
USP53-207ENST00000510852 KRTAP5-10Q6L8G5 202 aa2.27□□□□□ -2.05
USP53-207ENST00000510852 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
USP53-207ENST00000510852 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
USP53-207ENST00000510852 MUC5ACP98088 5654 aa2.16□□□□□ -2.06
USP53-207ENST00000510852 KRTAP5-7Q6L8G8 165 aa2.12□□□□□ -2.07
USP53-207ENST00000510852 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
USP53-207ENST00000510852 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
USP53-207ENST00000510852 KRTAP21-2Q3LI59 83 aa1.77□□□□□ -2.13
USP53-207ENST00000510852 PHGR1C9JFL3 82 aa1.54□□□□□ -2.16
USP53-207ENST00000510852 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 52.8 ms