RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 INE1O15225 51 aa5.77□□□□□ -1.49
SQSTM1-213ENST00000510187 SPRR2FQ96RM1 72 aa5.77□□□□□ -1.49
SQSTM1-213ENST00000510187 KRTAP5-9P26371 169 aa5.74□□□□□ -1.49
SQSTM1-213ENST00000510187 KRTAP6-3Q3LI67 103 aa5.74□□□□□ -1.49
SQSTM1-213ENST00000510187 KRTAP19-4Q3LI73 84 aa5.74□□□□□ -1.49
SQSTM1-213ENST00000510187 MT1EP04732 61 aa5.71□□□□□ -1.49
SQSTM1-213ENST00000510187 MUC12Q9UKN1 5478 aa5.63□□□□□ -1.51
SQSTM1-213ENST00000510187 MT1LQ93083 61 aa5.57□□□□□ -1.52
SQSTM1-213ENST00000510187 KRTAP9-6A8MVA2 160 aa5.54□□□□□ -1.52
SQSTM1-213ENST00000510187 KRTAP19-3Q7Z4W3 81 aa5.54□□□□□ -1.52
SQSTM1-213ENST00000510187 SPRR2EP22531 72 aa5.52□□□□□ -1.53
SQSTM1-213ENST00000510187 SPRR2BP35325 72 aa5.52□□□□□ -1.53
SQSTM1-213ENST00000510187 SPRR2AP35326 72 aa5.52□□□□□ -1.53
SQSTM1-213ENST00000510187 LCE1AQ5T7P2 110 aa5.52□□□□□ -1.53
SQSTM1-213ENST00000510187 MDN1Q9NU22 5596 aa5.51□□□□□ -1.53
SQSTM1-213ENST00000510187 MT1GP13640 62 aa5.46□□□□□ -1.54
SQSTM1-213ENST00000510187 LCE5AQ5TCM9 118 aa5.45□□□□□ -1.54
SQSTM1-213ENST00000510187 KRTAP2-3P0C7H8 128 aa5.44□□□□□ -1.54
SQSTM1-213ENST00000510187 KRTAP2-4Q9BYR9 128 aa5.44□□□□□ -1.54
SQSTM1-213ENST00000510187 KRTAP2-1Q9BYU5 128 aa5.44□□□□□ -1.54
SQSTM1-213ENST00000510187 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
SQSTM1-213ENST00000510187 MT1MQ8N339 61 aa5.39□□□□□ -1.55
SQSTM1-213ENST00000510187 NEBP20929 6669 aa5.38□□□□□ -1.55
SQSTM1-213ENST00000510187 SPRR2DP22532 72 aa5.33□□□□□ -1.56
SQSTM1-213ENST00000510187 KRTAP4-3Q9BYR4 195 aa5.28□□□□□ -1.56
SQSTM1-213ENST00000510187 DSTQ03001 7570 aaKnown RBP5.18□□□□□ -1.58
SQSTM1-213ENST00000510187 LCE3BQ5TA77 95 aa5.13□□□□□ -1.59
SQSTM1-213ENST00000510187 KRTAP20-1Q3LI63 56 aa5.11□□□□□ -1.59
SQSTM1-213ENST00000510187 LOC100996750A0A140TA64 210 aa5.07□□□□□ -1.6
SQSTM1-213ENST00000510187 KRTAP2-2Q9BYT5 123 aa4.94□□□□□ -1.62
SQSTM1-213ENST00000510187 KRTAP5-5Q701N2 237 aaPredicted RBP4.87□□□□□ -1.63
SQSTM1-213ENST00000510187 KRTAP5-4Q6L8H1 288 aa4.75□□□□□ -1.65
SQSTM1-213ENST00000510187 MT1AP04731 61 aa4.73□□□□□ -1.65
SQSTM1-213ENST00000510187 KRTAP12-4P60329 112 aa4.72□□□□□ -1.65
SQSTM1-213ENST00000510187 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
SQSTM1-213ENST00000510187 KRTAP6-1Q3LI64 71 aa4.69□□□□□ -1.66
SQSTM1-213ENST00000510187 MT4P47944 62 aa4.63□□□□□ -1.67
SQSTM1-213ENST00000510187 KRTAP4-9Q9BYQ8 210 aa4.63□□□□□ -1.67
SQSTM1-213ENST00000510187 SYNE1Q8NF91 8797 aaKnown RBP4.61□□□□□ -1.67
SQSTM1-213ENST00000510187 LCE1DQ5T752 114 aa4.58□□□□□ -1.68
SQSTM1-213ENST00000510187 KRTAP4-6Q9BYQ5 205 aa4.57□□□□□ -1.68
SQSTM1-213ENST00000510187 KRTAP9-4Q9BYQ2 154 aa4.51□□□□□ -1.69
SQSTM1-213ENST00000510187 LCE3DQ9BYE3 92 aa4.48□□□□□ -1.69
SQSTM1-213ENST00000510187 HMCN1Q96RW7 5635 aa4.47□□□□□ -1.69
SQSTM1-213ENST00000510187 KRTAP20-2Q3LI61 65 aa4.46□□□□□ -1.7
SQSTM1-213ENST00000510187 LCE3EQ5T5B0 92 aa4.43□□□□□ -1.7
SQSTM1-213ENST00000510187 GPR98Q8WXG9 6306 aa4.37□□□□□ -1.71
SQSTM1-213ENST00000510187 KRTAP6-2Q3LI66 62 aa4.36□□□□□ -1.71
SQSTM1-213ENST00000510187 MT3P25713 68 aa4.3□□□□□ -1.72
SQSTM1-213ENST00000510187 KRTAP5-3Q6L8H2 238 aa4.29□□□□□ -1.72
SQSTM1-213ENST00000510187 KRTAP5-2Q701N4 177 aa4.27□□□□□ -1.73
SQSTM1-213ENST00000510187 AHNAK2Q8IVF2 5795 aa4.18□□□□□ -1.74
SQSTM1-213ENST00000510187 PRM1P04553 51 aa4.17□□□□□ -1.74
SQSTM1-213ENST00000510187 KRTAP5-10Q6L8G5 202 aa4□□□□□ -1.77
SQSTM1-213ENST00000510187 OBSCNQ5VST9 7968 aa4□□□□□ -1.77
SQSTM1-213ENST00000510187 KRTAP4-11Q9BYQ6 195 aa3.92□□□□□ -1.78
SQSTM1-213ENST00000510187 KRTAP5-7Q6L8G8 165 aa3.84□□□□□ -1.8
SQSTM1-213ENST00000510187 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
SQSTM1-213ENST00000510187 KRTAP5-8O75690 187 aa3.77□□□□□ -1.81
SQSTM1-213ENST00000510187 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
SQSTM1-213ENST00000510187 LCE1BQ5T7P3 118 aa3.56□□□□□ -1.84
SQSTM1-213ENST00000510187 MUC5ACP98088 5654 aa3.55□□□□□ -1.84
SQSTM1-213ENST00000510187 KRTAP4-2Q9BYR5 136 aa3.53□□□□□ -1.85
SQSTM1-213ENST00000510187 LCE1CQ5T751 118 aa3.52□□□□□ -1.85
SQSTM1-213ENST00000510187 MUC5BQ9HC84 5762 aaPredicted RBP3.46□□□□□ -1.86
SQSTM1-213ENST00000510187 KRTAP9-9Q9BYP9 154 aa3.45□□□□□ -1.86
SQSTM1-213ENST00000510187 AHNAKQ09666 5890 aaKnown RBP3.43□□□□□ -1.86
SQSTM1-213ENST00000510187 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
SQSTM1-213ENST00000510187 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
SQSTM1-213ENST00000510187 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
SQSTM1-213ENST00000510187 KRTAP21-2Q3LI59 83 aa3.07□□□□□ -1.92
SQSTM1-213ENST00000510187 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
SQSTM1-213ENST00000510187 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
SQSTM1-213ENST00000510187 PHGR1C9JFL3 82 aa2.68□□□□□ -1.98
SQSTM1-213ENST00000510187 KRTAP21-1Q3LI58 79 aa2.68□□□□□ -1.98
SQSTM1-213ENST00000510187 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.03
SQSTM1-213ENST00000510187 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 55 ms