RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KTN1-AS1Q86SY8 53 aa10.72□□□□□ -0.69
LIMCH1-211ENST00000509638 SVIPQ8NHG7 77 aa10.7□□□□□ -0.7
LIMCH1-211ENST00000509638 KRTAP19-3Q7Z4W3 81 aa10.69□□□□□ -0.7
LIMCH1-211ENST00000509638 SPRR2DP22532 72 aa10.66□□□□□ -0.7
LIMCH1-211ENST00000509638 LCE5AQ5TCM9 118 aa10.61□□□□□ -0.71
LIMCH1-211ENST00000509638 MT1LQ93083 61 aa10.6□□□□□ -0.71
LIMCH1-211ENST00000509638 PP632Q6XCG6 107 aa10.56□□□□□ -0.72
LIMCH1-211ENST00000509638 KRTAP20-1Q3LI63 56 aa10.52□□□□□ -0.73
LIMCH1-211ENST00000509638 MT1GP13640 62 aa10.49□□□□□ -0.73
LIMCH1-211ENST00000509638 KRTAP2-3P0C7H8 128 aa10.41□□□□□ -0.74
LIMCH1-211ENST00000509638 KRTAP2-4Q9BYR9 128 aa10.41□□□□□ -0.74
LIMCH1-211ENST00000509638 MT1MQ8N339 61 aa10.37□□□□□ -0.75
LIMCH1-211ENST00000509638 PRAC1Q96KF2 57 aa10.33□□□□□ -0.76
LIMCH1-211ENST00000509638 LCE3BQ5TA77 95 aa10.3□□□□□ -0.76
LIMCH1-211ENST00000509638 KRTAP15-1Q3LI76 137 aa10.26□□□□□ -0.77
LIMCH1-211ENST00000509638 DSTQ03001 7570 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-211ENST00000509638 KRTAP4-7Q9BYR0 210 aa10.14□□□□□ -0.79
LIMCH1-211ENST00000509638 KRTAP2-2Q9BYT5 123 aa10.13□□□□□ -0.79
LIMCH1-211ENST00000509638 KRTAP2-1Q9BYU5 128 aa10.13□□□□□ -0.79
LIMCH1-211ENST00000509638 KRTAP4-3Q9BYR4 195 aa10.12□□□□□ -0.79
LIMCH1-211ENST00000509638 KRTAP19-4Q3LI73 84 aa10.05□□□□□ -0.8
LIMCH1-211ENST00000509638 LCE3CQ5T5A8 94 aa9.93□□□□□ -0.82
LIMCH1-211ENST00000509638 LOC100996750A0A140TA64 210 aa9.56□□□□□ -0.88
LIMCH1-211ENST00000509638 LCE4AQ5TA78 99 aa9.43□□□□□ -0.9
LIMCH1-211ENST00000509638 KRTAP5-5Q701N2 237 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-211ENST00000509638 KRTAP5-4Q6L8H1 288 aa9.41□□□□□ -0.9
LIMCH1-211ENST00000509638 KRTAP9-6A8MVA2 160 aa9.38□□□□□ -0.91
LIMCH1-211ENST00000509638 KRTAP4-9Q9BYQ8 210 aa9.38□□□□□ -0.91
LIMCH1-211ENST00000509638 MT4P47944 62 aa9.27□□□□□ -0.93
LIMCH1-211ENST00000509638 LCE1DQ5T752 114 aa9.27□□□□□ -0.93
LIMCH1-211ENST00000509638 HMCN1Q96RW7 5635 aa9.18□□□□□ -0.94
LIMCH1-211ENST00000509638 KRTAP4-6Q9BYQ5 205 aa9.08□□□□□ -0.96
LIMCH1-211ENST00000509638 MT1AP04731 61 aa9.01□□□□□ -0.97
LIMCH1-211ENST00000509638 SPRR5A0A1B0GTR4 108 aa8.98□□□□□ -0.97
LIMCH1-211ENST00000509638 KRTAP12-4P60329 112 aa8.97□□□□□ -0.97
LIMCH1-211ENST00000509638 KRTAP6-1Q3LI64 71 aa8.93□□□□□ -0.98
LIMCH1-211ENST00000509638 SYNE1Q8NF91 8797 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-211ENST00000509638 KRTAP20-2Q3LI61 65 aa8.86□□□□□ -0.99
LIMCH1-211ENST00000509638 KRTAP9-4Q9BYQ2 154 aa8.6□□□□□ -1.03
LIMCH1-211ENST00000509638 KRTAP5-3Q6L8H2 238 aa8.55□□□□□ -1.04
LIMCH1-211ENST00000509638 LUZP6Q538Z0 58 aa8.54□□□□□ -1.04
LIMCH1-211ENST00000509638 AHNAK2Q8IVF2 5795 aa8.53□□□□□ -1.04
LIMCH1-211ENST00000509638 KRTAP5-2Q701N4 177 aa8.39□□□□□ -1.07
LIMCH1-211ENST00000509638 KRTAP6-2Q3LI66 62 aa8.39□□□□□ -1.07
LIMCH1-211ENST00000509638 GPR98Q8WXG9 6306 aa8.36□□□□□ -1.07
LIMCH1-211ENST00000509638 NDUFAF8A1L188 74 aa8.27□□□□□ -1.09
LIMCH1-211ENST00000509638 KRTAP5-10Q6L8G5 202 aa8.2□□□□□ -1.1
LIMCH1-211ENST00000509638 MT3P25713 68 aa8.18□□□□□ -1.1
LIMCH1-211ENST00000509638 KRTAP4-11Q9BYQ6 195 aa7.88□□□□□ -1.15
LIMCH1-211ENST00000509638 KRTAP5-7Q6L8G8 165 aa7.76□□□□□ -1.17
LIMCH1-211ENST00000509638 OBSCNQ5VST9 7968 aa7.73□□□□□ -1.17
LIMCH1-211ENST00000509638 KRTAP5-8O75690 187 aa7.6□□□□□ -1.19
LIMCH1-211ENST00000509638 KRTAP5-1Q6L8H4 278 aa7.38□□□□□ -1.23
LIMCH1-211ENST00000509638 A0A0A0MQY5 61 aa7.37□□□□□ -1.23
LIMCH1-211ENST00000509638 LCE1EQ5T753 118 aa7.32□□□□□ -1.24
LIMCH1-211ENST00000509638 LCE3DQ9BYE3 92 aa7.31□□□□□ -1.24
LIMCH1-211ENST00000509638 H3BS24 57 aa7.29□□□□□ -1.24
LIMCH1-211ENST00000509638 MUC5ACP98088 5654 aa7.21□□□□□ -1.26
LIMCH1-211ENST00000509638 KRTAP9-9Q9BYP9 154 aa7.06□□□□□ -1.28
LIMCH1-211ENST00000509638 LCE3EQ5T5B0 92 aa6.99□□□□□ -1.29
LIMCH1-211ENST00000509638 INE1O15225 51 aa6.95□□□□□ -1.3
LIMCH1-211ENST00000509638 MUC5BQ9HC84 5762 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-211ENST00000509638 LCE1BQ5T7P3 118 aa6.88□□□□□ -1.31
LIMCH1-211ENST00000509638 KRTAP4-2Q9BYR5 136 aa6.88□□□□□ -1.31
LIMCH1-211ENST00000509638 LCE1CQ5T751 118 aa6.82□□□□□ -1.32
LIMCH1-211ENST00000509638 AHNAKQ09666 5890 aaKnown RBP6.75□□□□□ -1.33
LIMCH1-211ENST00000509638 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-211ENST00000509638 KRTAP5-11Q6L8G4 156 aa6.11□□□□□ -1.43
LIMCH1-211ENST00000509638 KRTAP4-12Q9BQ66 201 aa5.97□□□□□ -1.45
LIMCH1-211ENST00000509638 KRTAP21-2Q3LI59 83 aa5.86□□□□□ -1.47
LIMCH1-211ENST00000509638 PRM1P04553 51 aa5.72□□□□□ -1.49
LIMCH1-211ENST00000509638 LCE1FQ5T754 118 aa5.72□□□□□ -1.49
LIMCH1-211ENST00000509638 KRTAP4-4Q9BYR3 166 aa5.28□□□□□ -1.56
LIMCH1-211ENST00000509638 PHGR1C9JFL3 82 aa5.25□□□□□ -1.57
LIMCH1-211ENST00000509638 MUC19Q7Z5P9 8384 aa4.68□□□□□ -1.66
LIMCH1-211ENST00000509638 KRTAP21-1Q3LI58 79 aa3.56□□□□□ -1.84
LIMCH1-211ENST00000509638 MUC16Q8WXI7 14507 aa3.33□□□□□ -1.88
Retrieved 77 of 20,778 RNA–protein pairs in 6.6 ms