RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 KRTAP12-3P60328 96 aa3.59□□□□□ -1.84
PDGFRA-208ENST00000509490 KRTAP4-2Q9BYR5 136 aa3.57□□□□□ -1.84
PDGFRA-208ENST00000509490 INE1O15225 51 aa3.54□□□□□ -1.84
PDGFRA-208ENST00000509490 KRTAP10-7P60409 375 aaPredicted RBP3.52□□□□□ -1.85
PDGFRA-208ENST00000509490 LCE3CQ5T5A8 94 aa3.41□□□□□ -1.86
PDGFRA-208ENST00000509490 KRTAP19-5Q3LI72 72 aa3.39□□□□□ -1.87
PDGFRA-208ENST00000509490 KRTAP19-7Q3SYF9 63 aa3.3□□□□□ -1.88
PDGFRA-208ENST00000509490 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
PDGFRA-208ENST00000509490 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
PDGFRA-208ENST00000509490 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
PDGFRA-208ENST00000509490 KRTAP9-6A8MVA2 160 aa3.25□□□□□ -1.89
PDGFRA-208ENST00000509490 MT1LQ93083 61 aa3.2□□□□□ -1.9
PDGFRA-208ENST00000509490 MT1EP04732 61 aa3.2□□□□□ -1.9
PDGFRA-208ENST00000509490 USH2AO75445 5202 aa3.2□□□□□ -1.9
PDGFRA-208ENST00000509490 KRTAP2-2Q9BYT5 123 aa3.16□□□□□ -1.9
PDGFRA-208ENST00000509490 KRTAP19-6Q3LI70 58 aa3.14□□□□□ -1.91
PDGFRA-208ENST00000509490 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
PDGFRA-208ENST00000509490 SSPOA2VEC9 5147 aa3.12□□□□□ -1.91
PDGFRA-208ENST00000509490 LCE1AQ5T7P2 110 aa3.09□□□□□ -1.92
PDGFRA-208ENST00000509490 KMT2DO14686 5537 aa3.07□□□□□ -1.92
PDGFRA-208ENST00000509490 LCE1EQ5T753 118 aa2.99□□□□□ -1.93
PDGFRA-208ENST00000509490 KRTAP5-3Q6L8H2 238 aa2.99□□□□□ -1.93
PDGFRA-208ENST00000509490 MT1GP13640 62 aa2.99□□□□□ -1.93
PDGFRA-208ENST00000509490 KRTAP19-3Q7Z4W3 81 aa2.97□□□□□ -1.93
PDGFRA-208ENST00000509490 MT1MQ8N339 61 aa2.97□□□□□ -1.93
PDGFRA-208ENST00000509490 CRCT1Q9UGL9 99 aa2.89□□□□□ -1.95
PDGFRA-208ENST00000509490 KRTAP4-3Q9BYR4 195 aa2.88□□□□□ -1.95
PDGFRA-208ENST00000509490 MT1AP04731 61 aa2.82□□□□□ -1.96
PDGFRA-208ENST00000509490 KRTAP6-3Q3LI67 103 aa2.79□□□□□ -1.96
PDGFRA-208ENST00000509490 FCGBPQ9Y6R7 5405 aaPredicted RBP2.78□□□□□ -1.96
PDGFRA-208ENST00000509490 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
PDGFRA-208ENST00000509490 KRTAP12-4P60329 112 aa2.77□□□□□ -1.97
PDGFRA-208ENST00000509490 SPRR2FQ96RM1 72 aa2.71□□□□□ -1.98
PDGFRA-208ENST00000509490 MUC12Q9UKN1 5478 aa2.71□□□□□ -1.98
PDGFRA-208ENST00000509490 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
PDGFRA-208ENST00000509490 KRTAP5-9P26371 169 aa2.68□□□□□ -1.98
PDGFRA-208ENST00000509490 KRTAP6-1Q3LI64 71 aa2.67□□□□□ -1.98
PDGFRA-208ENST00000509490 MT3P25713 68 aa2.66□□□□□ -1.98
PDGFRA-208ENST00000509490 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
PDGFRA-208ENST00000509490 GPR98Q8WXG9 6306 aa2.59□□□□□ -2
PDGFRA-208ENST00000509490 FSIP2Q5CZC0 6907 aa2.55□□□□□ -2
PDGFRA-208ENST00000509490 KRTAP20-1Q3LI63 56 aa2.54□□□□□ -2
PDGFRA-208ENST00000509490 MACF1Q9UPN3 7388 aaKnown RBP2.53□□□□□ -2
PDGFRA-208ENST00000509490 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
PDGFRA-208ENST00000509490 NEBP20929 6669 aa2.48□□□□□ -2.01
PDGFRA-208ENST00000509490 SPRR2EP22531 72 aa2.47□□□□□ -2.01
PDGFRA-208ENST00000509490 SPRR2BP35325 72 aa2.47□□□□□ -2.01
PDGFRA-208ENST00000509490 SPRR2AP35326 72 aa2.47□□□□□ -2.01
PDGFRA-208ENST00000509490 PRM1P04553 51 aa2.45□□□□□ -2.02
PDGFRA-208ENST00000509490 SYNE1Q8NF91 8797 aaKnown RBP2.44□□□□□ -2.02
PDGFRA-208ENST00000509490 MDN1Q9NU22 5596 aa2.43□□□□□ -2.02
PDGFRA-208ENST00000509490 DSTQ03001 7570 aaKnown RBP2.42□□□□□ -2.02
PDGFRA-208ENST00000509490 KRTAP6-2Q3LI66 62 aa2.4□□□□□ -2.03
PDGFRA-208ENST00000509490 SPRR2DP22532 72 aa2.37□□□□□ -2.03
PDGFRA-208ENST00000509490 KRTAP5-4Q6L8H1 288 aa2.37□□□□□ -2.03
PDGFRA-208ENST00000509490 SYNE2Q8WXH0 6885 aaKnown RBP2.37□□□□□ -2.03
PDGFRA-208ENST00000509490 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
PDGFRA-208ENST00000509490 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
PDGFRA-208ENST00000509490 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.21□□□□□ -2.06
PDGFRA-208ENST00000509490 OBSCNQ5VST9 7968 aa2.18□□□□□ -2.06
PDGFRA-208ENST00000509490 KRTAP5-7Q6L8G8 165 aa2.15□□□□□ -2.07
PDGFRA-208ENST00000509490 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.07
PDGFRA-208ENST00000509490 KRTAP20-2Q3LI61 65 aa2.14□□□□□ -2.07
PDGFRA-208ENST00000509490 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
PDGFRA-208ENST00000509490 KRTAP5-1Q6L8H4 278 aa2.08□□□□□ -2.08
PDGFRA-208ENST00000509490 AHNAK2Q8IVF2 5795 aa2.04□□□□□ -2.08
PDGFRA-208ENST00000509490 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
PDGFRA-208ENST00000509490 MT4P47944 62 aa2□□□□□ -2.09
PDGFRA-208ENST00000509490 MUC5ACP98088 5654 aa1.99□□□□□ -2.09
PDGFRA-208ENST00000509490 KRTAP4-4Q9BYR3 166 aa1.95□□□□□ -2.1
PDGFRA-208ENST00000509490 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
PDGFRA-208ENST00000509490 LCE1CQ5T751 118 aa1.92□□□□□ -2.1
PDGFRA-208ENST00000509490 LCE1BQ5T7P3 118 aa1.92□□□□□ -2.1
PDGFRA-208ENST00000509490 KRTAP5-8O75690 187 aa1.78□□□□□ -2.12
PDGFRA-208ENST00000509490 KRTAP21-2Q3LI59 83 aa1.77□□□□□ -2.13
PDGFRA-208ENST00000509490 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
PDGFRA-208ENST00000509490 PHGR1C9JFL3 82 aa1.41□□□□□ -2.18
PDGFRA-208ENST00000509490 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 66.3 ms