RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 DNAH5Q8TE73 4624 aa2.02□□□□□ -2.09
RFC1-208ENST00000504849 VPS13BQ7Z7G8 4022 aa2□□□□□ -2.09
RFC1-208ENST00000504849 M0QZ58 72 aa1.99□□□□□ -2.09
RFC1-208ENST00000504849 SMR3BP02814 79 aaPredicted RBP1.98□□□□□ -2.09
RFC1-208ENST00000504849 KRTAP13-4Q3LI77 160 aa1.98□□□□□ -2.09
RFC1-208ENST00000504849 C10orf95Q9H7T3 257 aa1.97□□□□□ -2.09
RFC1-208ENST00000504849 PKHD1L1Q86WI1 4243 aa1.96□□□□□ -2.1
RFC1-208ENST00000504849 KRTAP12-1P59990 96 aa1.95□□□□□ -2.1
RFC1-208ENST00000504849 KRTAP10-4P60372 401 aaPredicted RBP1.95□□□□□ -2.1
RFC1-208ENST00000504849 LRP1Q07954 4544 aaKnown RBP1.92□□□□□ -2.1
RFC1-208ENST00000504849 Q5VSD8 79 aa1.91□□□□□ -2.1
RFC1-208ENST00000504849 FAT3Q8TDW7 4589 aa1.9□□□□□ -2.11
RFC1-208ENST00000504849 SSPOA2VEC9 5147 aa1.89□□□□□ -2.11
RFC1-208ENST00000504849 PLAC4Q8WY50 150 aa1.89□□□□□ -2.11
RFC1-208ENST00000504849 TNXBP22105 4242 aa1.85□□□□□ -2.11
RFC1-208ENST00000504849 KRTAP4-1Q9BYQ7 146 aa1.83□□□□□ -2.12
RFC1-208ENST00000504849 INE1O15225 51 aa1.81□□□□□ -2.12
RFC1-208ENST00000504849 MT1HL1P0DM35 61 aa1.8□□□□□ -2.12
RFC1-208ENST00000504849 KRTAP10-10P60014 251 aa1.8□□□□□ -2.12
RFC1-208ENST00000504849 KRTAP20-1Q3LI63 56 aa1.8□□□□□ -2.12
RFC1-208ENST00000504849 LPAP08519 4548 aa1.79□□□□□ -2.12
RFC1-208ENST00000504849 TNP1P09430 55 aa1.78□□□□□ -2.12
RFC1-208ENST00000504849 SYNE2Q8WXH0 6885 aaKnown RBP1.77□□□□□ -2.13
RFC1-208ENST00000504849 NEBP20929 6669 aa1.77□□□□□ -2.13
RFC1-208ENST00000504849 FCGBPQ9Y6R7 5405 aaPredicted RBP1.75□□□□□ -2.13
RFC1-208ENST00000504849 GPR98Q8WXG9 6306 aa1.73□□□□□ -2.13
RFC1-208ENST00000504849 USH2AO75445 5202 aa1.73□□□□□ -2.13
RFC1-208ENST00000504849 KRTAP6-3Q3LI67 103 aa1.73□□□□□ -2.13
RFC1-208ENST00000504849 MACF1Q9UPN3 7388 aaKnown RBP1.72□□□□□ -2.13
RFC1-208ENST00000504849 KMT2DO14686 5537 aa1.67□□□□□ -2.14
RFC1-208ENST00000504849 MUC12Q9UKN1 5478 aa1.66□□□□□ -2.14
RFC1-208ENST00000504849 KRTAP2-3P0C7H8 128 aa1.66□□□□□ -2.14
RFC1-208ENST00000504849 KRTAP2-4Q9BYR9 128 aa1.66□□□□□ -2.14
RFC1-208ENST00000504849 KRTAP19-2Q3LHN2 52 aa1.65□□□□□ -2.15
RFC1-208ENST00000504849 MUC17Q685J3 4493 aa1.62□□□□□ -2.15
RFC1-208ENST00000504849 SPRR2GQ9BYE4 73 aa1.62□□□□□ -2.15
RFC1-208ENST00000504849 M0R2T5 61 aa1.59□□□□□ -2.15
RFC1-208ENST00000504849 KRTAP8-1Q8IUC2 63 aa1.59□□□□□ -2.15
RFC1-208ENST00000504849 FLGP20930 4061 aaPredicted RBP1.58□□□□□ -2.16
RFC1-208ENST00000504849 KRTAP2-1Q9BYU5 128 aa1.58□□□□□ -2.16
RFC1-208ENST00000504849 KRTAP12-3P60328 96 aa1.55□□□□□ -2.16
RFC1-208ENST00000504849 KRTAP19-8Q3LI54 63 aa1.55□□□□□ -2.16
RFC1-208ENST00000504849 MDN1Q9NU22 5596 aa1.55□□□□□ -2.16
RFC1-208ENST00000504849 MT2AP02795 61 aa1.52□□□□□ -2.17
RFC1-208ENST00000504849 MT1HP80294 61 aa1.51□□□□□ -2.17
RFC1-208ENST00000504849 MT1FP04733 61 aa1.5□□□□□ -2.17
RFC1-208ENST00000504849 MT1XP80297 61 aa1.49□□□□□ -2.17
RFC1-208ENST00000504849 KRTAP12-4P60329 112 aa1.48□□□□□ -2.17
RFC1-208ENST00000504849 KRTAP19-6Q3LI70 58 aa1.48□□□□□ -2.17
RFC1-208ENST00000504849 MT1BP07438 61 aa1.47□□□□□ -2.17
RFC1-208ENST00000504849 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
RFC1-208ENST00000504849 KRTAP5-10Q6L8G5 202 aa1.44□□□□□ -2.18
RFC1-208ENST00000504849 KRTAP19-5Q3LI72 72 aa1.43□□□□□ -2.18
RFC1-208ENST00000504849 DSTQ03001 7570 aaKnown RBP1.4□□□□□ -2.18
RFC1-208ENST00000504849 SPRR2EP22531 72 aa1.36□□□□□ -2.19
RFC1-208ENST00000504849 SPRR2BP35325 72 aa1.36□□□□□ -2.19
RFC1-208ENST00000504849 SPRR2AP35326 72 aa1.36□□□□□ -2.19
RFC1-208ENST00000504849 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.19
RFC1-208ENST00000504849 SPRR2DP22532 72 aa1.32□□□□□ -2.2
RFC1-208ENST00000504849 KRTAP19-7Q3SYF9 63 aa1.31□□□□□ -2.2
RFC1-208ENST00000504849 MT1LQ93083 61 aa1.31□□□□□ -2.2
RFC1-208ENST00000504849 MT1EP04732 61 aa1.3□□□□□ -2.2
RFC1-208ENST00000504849 MUC5BQ9HC84 5762 aaPredicted RBP1.28□□□□□ -2.2
RFC1-208ENST00000504849 SPRR2FQ96RM1 72 aa1.27□□□□□ -2.21
RFC1-208ENST00000504849 MUC5ACP98088 5654 aa1.24□□□□□ -2.21
RFC1-208ENST00000504849 MT1GP13640 62 aa1.23□□□□□ -2.21
RFC1-208ENST00000504849 KRTAP19-3Q7Z4W3 81 aa1.21□□□□□ -2.22
RFC1-208ENST00000504849 MT1MQ8N339 61 aa1.21□□□□□ -2.22
RFC1-208ENST00000504849 MT1AP04731 61 aa1.2□□□□□ -2.22
RFC1-208ENST00000504849 MT4P47944 62 aa1.18□□□□□ -2.22
RFC1-208ENST00000504849 PRM1P04553 51 aa1.11□□□□□ -2.23
RFC1-208ENST00000504849 KRTAP6-1Q3LI64 71 aa1.09□□□□□ -2.23
RFC1-208ENST00000504849 KRTAP6-2Q3LI66 62 aa1.05□□□□□ -2.24
RFC1-208ENST00000504849 SYNE1Q8NF91 8797 aaKnown RBP1.04□□□□□ -2.24
RFC1-208ENST00000504849 KRTAP20-2Q3LI61 65 aa1.02□□□□□ -2.25
RFC1-208ENST00000504849 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
RFC1-208ENST00000504849 PHGR1C9JFL3 82 aa0.85□□□□□ -2.27
RFC1-208ENST00000504849 KRTAP21-1Q3LI58 79 aa0.72□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 99.1 ms