RNA–Protein interactions for RNA: ENST00000504687.5

LMNA-220, Transcript of lamin A/C, humanhuman

TSL 4

Gene LMNA, Length 546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-220ENST00000504687 MT1LQ93083 61 aa4.73□□□□□ -1.65
LMNA-220ENST00000504687 LCE3CQ5T5A8 94 aa4.71□□□□□ -1.66
LMNA-220ENST00000504687 MUC12Q9UKN1 5478 aa4.7□□□□□ -1.66
LMNA-220ENST00000504687 SPRR2FQ96RM1 72 aa4.69□□□□□ -1.66
LMNA-220ENST00000504687 KRTAP19-3Q7Z4W3 81 aa4.63□□□□□ -1.67
LMNA-220ENST00000504687 NEBP20929 6669 aa4.63□□□□□ -1.67
LMNA-220ENST00000504687 MT1GP13640 62 aa4.62□□□□□ -1.67
LMNA-220ENST00000504687 LUZP6Q538Z0 58 aa4.61□□□□□ -1.67
LMNA-220ENST00000504687 LCE5AQ5TCM9 118 aa4.57□□□□□ -1.68
LMNA-220ENST00000504687 SPRR2EP22531 72 aa4.56□□□□□ -1.68
LMNA-220ENST00000504687 SPRR2BP35325 72 aa4.56□□□□□ -1.68
LMNA-220ENST00000504687 SPRR2AP35326 72 aa4.56□□□□□ -1.68
LMNA-220ENST00000504687 MDN1Q9NU22 5596 aa4.56□□□□□ -1.68
LMNA-220ENST00000504687 LCE1AQ5T7P2 110 aa4.54□□□□□ -1.68
LMNA-220ENST00000504687 MT1MQ8N339 61 aa4.53□□□□□ -1.68
LMNA-220ENST00000504687 NDUFAF8A1L188 74 aa4.49□□□□□ -1.69
LMNA-220ENST00000504687 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
LMNA-220ENST00000504687 KRTAP9-6A8MVA2 160 aa4.42□□□□□ -1.7
LMNA-220ENST00000504687 KRTAP20-1Q3LI63 56 aa4.4□□□□□ -1.71
LMNA-220ENST00000504687 SPRR2DP22532 72 aa4.39□□□□□ -1.71
LMNA-220ENST00000504687 KRTAP2-3P0C7H8 128 aa4.36□□□□□ -1.71
LMNA-220ENST00000504687 KRTAP2-4Q9BYR9 128 aa4.36□□□□□ -1.71
LMNA-220ENST00000504687 KRTAP4-3Q9BYR4 195 aa4.35□□□□□ -1.71
LMNA-220ENST00000504687 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
LMNA-220ENST00000504687 H3BS24 57 aa4.26□□□□□ -1.73
LMNA-220ENST00000504687 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
LMNA-220ENST00000504687 KRTAP2-1Q9BYU5 128 aa4.24□□□□□ -1.73
LMNA-220ENST00000504687 LOC100996750A0A140TA64 210 aa4.21□□□□□ -1.74
LMNA-220ENST00000504687 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
LMNA-220ENST00000504687 KRTAP5-5Q701N2 237 aaPredicted RBP4.13□□□□□ -1.75
LMNA-220ENST00000504687 MT1AP04731 61 aa4.05□□□□□ -1.76
LMNA-220ENST00000504687 A0A0A0MQY5 61 aa4.02□□□□□ -1.77
LMNA-220ENST00000504687 KRTAP6-1Q3LI64 71 aa3.95□□□□□ -1.78
LMNA-220ENST00000504687 KRTAP5-4Q6L8H1 288 aa3.94□□□□□ -1.78
LMNA-220ENST00000504687 KRTAP4-9Q9BYQ8 210 aa3.93□□□□□ -1.78
LMNA-220ENST00000504687 LCE4AQ5TA78 99 aa3.89□□□□□ -1.79
LMNA-220ENST00000504687 MT4P47944 62 aa3.85□□□□□ -1.79
LMNA-220ENST00000504687 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
LMNA-220ENST00000504687 KRTAP9-4Q9BYQ2 154 aa3.84□□□□□ -1.79
LMNA-220ENST00000504687 INE1O15225 51 aa3.83□□□□□ -1.8
LMNA-220ENST00000504687 KRTAP12-4P60329 112 aa3.79□□□□□ -1.8
LMNA-220ENST00000504687 KRTAP4-6Q9BYQ5 205 aa3.79□□□□□ -1.8
LMNA-220ENST00000504687 SYNE1Q8NF91 8797 aaKnown RBP3.73□□□□□ -1.81
LMNA-220ENST00000504687 HMCN1Q96RW7 5635 aa3.7□□□□□ -1.82
LMNA-220ENST00000504687 MT3P25713 68 aa3.66□□□□□ -1.82
LMNA-220ENST00000504687 KRTAP20-2Q3LI61 65 aa3.65□□□□□ -1.83
LMNA-220ENST00000504687 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
LMNA-220ENST00000504687 KRTAP5-2Q701N4 177 aa3.59□□□□□ -1.83
LMNA-220ENST00000504687 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
LMNA-220ENST00000504687 KRTAP5-3Q6L8H2 238 aa3.55□□□□□ -1.84
LMNA-220ENST00000504687 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
LMNA-220ENST00000504687 GPR98Q8WXG9 6306 aa3.52□□□□□ -1.85
LMNA-220ENST00000504687 LCE3EQ5T5B0 92 aa3.45□□□□□ -1.86
LMNA-220ENST00000504687 KRTAP5-10Q6L8G5 202 aa3.44□□□□□ -1.86
LMNA-220ENST00000504687 KRTAP4-11Q9BYQ6 195 aa3.27□□□□□ -1.89
LMNA-220ENST00000504687 KRTAP5-7Q6L8G8 165 aa3.26□□□□□ -1.89
LMNA-220ENST00000504687 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
LMNA-220ENST00000504687 OBSCNQ5VST9 7968 aa3.22□□□□□ -1.89
LMNA-220ENST00000504687 KRTAP5-8O75690 187 aa3.17□□□□□ -1.9
LMNA-220ENST00000504687 KRTAP5-1Q6L8H4 278 aa3.06□□□□□ -1.92
LMNA-220ENST00000504687 LCE1CQ5T751 118 aa2.99□□□□□ -1.93
LMNA-220ENST00000504687 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
LMNA-220ENST00000504687 PRM1P04553 51 aa2.98□□□□□ -1.93
LMNA-220ENST00000504687 KRTAP4-2Q9BYR5 136 aa2.95□□□□□ -1.94
LMNA-220ENST00000504687 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
LMNA-220ENST00000504687 KRTAP9-9Q9BYP9 154 aa2.93□□□□□ -1.94
LMNA-220ENST00000504687 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.85□□□□□ -1.95
LMNA-220ENST00000504687 AHNAKQ09666 5890 aaKnown RBP2.81□□□□□ -1.96
LMNA-220ENST00000504687 MUC5BQ9HC84 5762 aaPredicted RBP2.81□□□□□ -1.96
LMNA-220ENST00000504687 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
LMNA-220ENST00000504687 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
LMNA-220ENST00000504687 KRTAP4-12Q9BQ66 201 aa2.5□□□□□ -2.01
LMNA-220ENST00000504687 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
LMNA-220ENST00000504687 PHGR1C9JFL3 82 aa2.25□□□□□ -2.05
LMNA-220ENST00000504687 KRTAP4-4Q9BYR3 166 aa2.2□□□□□ -2.06
LMNA-220ENST00000504687 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
LMNA-220ENST00000504687 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
LMNA-220ENST00000504687 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 5.8 ms