RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 KRTAP19-3Q7Z4W3 81 aa5.24□□□□□ -1.57
HOXC9-202ENST00000504557 LINC01558Q9Y6Z2 57 aa5.24□□□□□ -1.57
HOXC9-202ENST00000504557 TMEM258P61165 79 aa5.22□□□□□ -1.57
HOXC9-202ENST00000504557 C10orf95Q9H7T3 257 aa5.21□□□□□ -1.58
HOXC9-202ENST00000504557 TNP1P09430 55 aa5.18□□□□□ -1.58
HOXC9-202ENST00000504557 DSTQ03001 7570 aaKnown RBP5.17□□□□□ -1.58
HOXC9-202ENST00000504557 LCE3AQ5TA76 89 aa5.16□□□□□ -1.58
HOXC9-202ENST00000504557 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
HOXC9-202ENST00000504557 UQCR11O14957 56 aa5.13□□□□□ -1.59
HOXC9-202ENST00000504557 MT1GP13640 62 aa5.1□□□□□ -1.59
HOXC9-202ENST00000504557 PP632Q6XCG6 107 aa5.09□□□□□ -1.59
HOXC9-202ENST00000504557 MT1LQ93083 61 aa5.07□□□□□ -1.6
HOXC9-202ENST00000504557 MT1MQ8N339 61 aa5.05□□□□□ -1.6
HOXC9-202ENST00000504557 MIR22HGQ0VDD5 57 aa5.04□□□□□ -1.6
HOXC9-202ENST00000504557 PSPHP1O15172 72 aa5□□□□□ -1.61
HOXC9-202ENST00000504557 KRTAP4-3Q9BYR4 195 aa5□□□□□ -1.61
HOXC9-202ENST00000504557 K7ERS5 55 aa4.94□□□□□ -1.62
HOXC9-202ENST00000504557 KRTAP12-3P60328 96 aa4.94□□□□□ -1.62
HOXC9-202ENST00000504557 V9GYY9 64 aa4.93□□□□□ -1.62
HOXC9-202ENST00000504557 Q1T7F1 81 aa4.89□□□□□ -1.63
HOXC9-202ENST00000504557 MT4P47944 62 aa4.88□□□□□ -1.63
HOXC9-202ENST00000504557 KRTAP25-1Q3LHN0 102 aa4.87□□□□□ -1.63
HOXC9-202ENST00000504557 A6NED7 52 aa4.83□□□□□ -1.64
HOXC9-202ENST00000504557 GPR98Q8WXG9 6306 aa4.79□□□□□ -1.64
HOXC9-202ENST00000504557 HMCN1Q96RW7 5635 aa4.73□□□□□ -1.65
HOXC9-202ENST00000504557 KRTAP5-4Q6L8H1 288 aa4.73□□□□□ -1.65
HOXC9-202ENST00000504557 CDC42SE1Q9NRR8 79 aa4.68□□□□□ -1.66
HOXC9-202ENST00000504557 PCP4P48539 62 aa4.66□□□□□ -1.66
HOXC9-202ENST00000504557 KRTAP23-1A1A580 65 aa4.62□□□□□ -1.67
HOXC9-202ENST00000504557 KRTAP15-1Q3LI76 137 aa4.62□□□□□ -1.67
HOXC9-202ENST00000504557 RPS28P62857 69 aaKnown RBP4.61□□□□□ -1.67
HOXC9-202ENST00000504557 ROMO1P60602 79 aa4.6□□□□□ -1.67
HOXC9-202ENST00000504557 AHNAK2Q8IVF2 5795 aa4.59□□□□□ -1.67
HOXC9-202ENST00000504557 KRTAP5-5Q701N2 237 aaPredicted RBP4.57□□□□□ -1.68
HOXC9-202ENST00000504557 LCE3CQ5T5A8 94 aa4.54□□□□□ -1.68
HOXC9-202ENST00000504557 KRTAP20-2Q3LI61 65 aa4.51□□□□□ -1.69
HOXC9-202ENST00000504557 KRTAP12-4P60329 112 aa4.5□□□□□ -1.69
HOXC9-202ENST00000504557 KRTAP5-10Q6L8G5 202 aa4.47□□□□□ -1.69
HOXC9-202ENST00000504557 SPRR5A0A1B0GTR4 108 aa4.44□□□□□ -1.7
HOXC9-202ENST00000504557 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
HOXC9-202ENST00000504557 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
HOXC9-202ENST00000504557 MT1AP04731 61 aa4.3□□□□□ -1.72
HOXC9-202ENST00000504557 KRTAP9-6A8MVA2 160 aa4.29□□□□□ -1.72
HOXC9-202ENST00000504557 KRTAP5-7Q6L8G8 165 aa4.27□□□□□ -1.73
HOXC9-202ENST00000504557 BRK1Q8WUW1 75 aa4.18□□□□□ -1.74
HOXC9-202ENST00000504557 KRTAP5-2Q701N4 177 aa4.15□□□□□ -1.75
HOXC9-202ENST00000504557 KRTAP6-2Q3LI66 62 aa4.12□□□□□ -1.75
HOXC9-202ENST00000504557 KRTAP5-8O75690 187 aa3.96□□□□□ -1.78
HOXC9-202ENST00000504557 OBSCNQ5VST9 7968 aa3.95□□□□□ -1.78
HOXC9-202ENST00000504557 MT3P25713 68 aa3.94□□□□□ -1.78
HOXC9-202ENST00000504557 PMAIP1Q13794 54 aa3.9□□□□□ -1.79
HOXC9-202ENST00000504557 PRAC1Q96KF2 57 aa3.81□□□□□ -1.8
HOXC9-202ENST00000504557 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
HOXC9-202ENST00000504557 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
HOXC9-202ENST00000504557 AHNAKQ09666 5890 aaKnown RBP3.73□□□□□ -1.81
HOXC9-202ENST00000504557 KRTAP5-11Q6L8G4 156 aa3.72□□□□□ -1.81
HOXC9-202ENST00000504557 MUC5ACP98088 5654 aa3.72□□□□□ -1.81
HOXC9-202ENST00000504557 MUC5BQ9HC84 5762 aaPredicted RBP3.72□□□□□ -1.81
HOXC9-202ENST00000504557 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
HOXC9-202ENST00000504557 PRO0628Q9UI54 55 aa3.55□□□□□ -1.84
HOXC9-202ENST00000504557 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
HOXC9-202ENST00000504557 KTN1-AS1Q86SY8 53 aa3.42□□□□□ -1.86
HOXC9-202ENST00000504557 SVIPQ8NHG7 77 aa3.4□□□□□ -1.87
HOXC9-202ENST00000504557 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
HOXC9-202ENST00000504557 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
HOXC9-202ENST00000504557 LUZP6Q538Z0 58 aa3.18□□□□□ -1.9
HOXC9-202ENST00000504557 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
HOXC9-202ENST00000504557 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
HOXC9-202ENST00000504557 LCE1FQ5T754 118 aa2.92□□□□□ -1.94
HOXC9-202ENST00000504557 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
HOXC9-202ENST00000504557 A0A0A0MQY5 61 aa2.74□□□□□ -1.97
HOXC9-202ENST00000504557 PHGR1C9JFL3 82 aa2.65□□□□□ -1.99
HOXC9-202ENST00000504557 NDUFAF8A1L188 74 aa2.57□□□□□ -2
HOXC9-202ENST00000504557 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
HOXC9-202ENST00000504557 PRM1P04553 51 aa2.38□□□□□ -2.03
HOXC9-202ENST00000504557 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
HOXC9-202ENST00000504557 INE1O15225 51 aa1.96□□□□□ -2.1
HOXC9-202ENST00000504557 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 189.7 ms