RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	KRTAP8-1	Q8IUC2	63 aa		4.68	□□□□□ -1.66
PDLIM5-208	ENST00000504489		A6NED7	52 aa		4.63	□□□□□ -1.67
PDLIM5-208	ENST00000504489	C10orf95	Q9H7T3	257 aa		4.61	□□□□□ -1.67
PDLIM5-208	ENST00000504489	SPRR2F	Q96RM1	72 aa		4.6	□□□□□ -1.67
PDLIM5-208	ENST00000504489		K7ERS5	55 aa		4.59	□□□□□ -1.67
PDLIM5-208	ENST00000504489	MUC12	Q9UKN1	5478 aa		4.56	□□□□□ -1.68
PDLIM5-208	ENST00000504489	TNP1	P09430	55 aa		4.55	□□□□□ -1.68
PDLIM5-208	ENST00000504489	CDC42SE1	Q9NRR8	79 aa		4.5	□□□□□ -1.69
PDLIM5-208	ENST00000504489	SPRR2E	P22531	72 aa		4.48	□□□□□ -1.69
PDLIM5-208	ENST00000504489	SPRR2B	P35325	72 aa		4.48	□□□□□ -1.69
PDLIM5-208	ENST00000504489	SPRR2A	P35326	72 aa		4.48	□□□□□ -1.69
PDLIM5-208	ENST00000504489	KRTAP19-7	Q3SYF9	63 aa		4.46	□□□□□ -1.7
PDLIM5-208	ENST00000504489	MDN1	Q9NU22	5596 aa		4.45	□□□□□ -1.7
PDLIM5-208	ENST00000504489	NEB	P20929	6669 aa		4.44	□□□□□ -1.7
PDLIM5-208	ENST00000504489	KRTAP25-1	Q3LHN0	102 aa		4.43	□□□□□ -1.7
PDLIM5-208	ENST00000504489	LCE3A	Q5TA76	89 aa		4.43	□□□□□ -1.7
PDLIM5-208	ENST00000504489		A0A0A0MQY5	61 aa		4.42	□□□□□ -1.7
PDLIM5-208	ENST00000504489	MT1E	P04732	61 aa		4.4	□□□□□ -1.71
PDLIM5-208	ENST00000504489	KRTAP19-5	Q3LI72	72 aa		4.4	□□□□□ -1.71
PDLIM5-208	ENST00000504489	ROMO1	P60602	79 aa		4.33	□□□□□ -1.72
PDLIM5-208	ENST00000504489	SPRR2D	P22532	72 aa		4.32	□□□□□ -1.72
PDLIM5-208	ENST00000504489	KRTAP20-1	Q3LI63	56 aa		4.32	□□□□□ -1.72
PDLIM5-208	ENST00000504489	KRTAP19-3	Q7Z4W3	81 aa		4.32	□□□□□ -1.72
PDLIM5-208	ENST00000504489	KRTAP2-3	P0C7H8	128 aa		4.3	□□□□□ -1.72
PDLIM5-208	ENST00000504489	KRTAP2-4	Q9BYR9	128 aa		4.3	□□□□□ -1.72
PDLIM5-208	ENST00000504489	KRTAP12-3	P60328	96 aa		4.27	□□□□□ -1.73
PDLIM5-208	ENST00000504489	MT1G	P13640	62 aa		4.26	□□□□□ -1.73
PDLIM5-208	ENST00000504489	BRK1	Q8WUW1	75 aa		4.26	□□□□□ -1.73
PDLIM5-208	ENST00000504489	MT1L	Q93083	61 aa		4.25	□□□□□ -1.73
PDLIM5-208	ENST00000504489	PP632	Q6XCG6	107 aa		4.21	□□□□□ -1.74
PDLIM5-208	ENST00000504489	KRTAP2-1	Q9BYU5	128 aa		4.18	□□□□□ -1.74
PDLIM5-208	ENST00000504489	LCE1F	Q5T754	118 aa		4.17	□□□□□ -1.74
PDLIM5-208	ENST00000504489	MT1M	Q8N339	61 aa		4.17	□□□□□ -1.74
PDLIM5-208	ENST00000504489	KRTAP9-6	A8MVA2	160 aa		4.13	□□□□□ -1.75
PDLIM5-208	ENST00000504489	KRTAP5-1	Q6L8H4	278 aa		4.12	□□□□□ -1.75
PDLIM5-208	ENST00000504489	KRTAP4-3	Q9BYR4	195 aa		4.04	□□□□□ -1.76
PDLIM5-208	ENST00000504489	PMAIP1	Q13794	54 aa		4.03	□□□□□ -1.76
PDLIM5-208	ENST00000504489	DST	Q03001	7570 aa	Known RBP	3.99	□□□□□ -1.77
PDLIM5-208	ENST00000504489	LCE3C	Q5T5A8	94 aa		3.97	□□□□□ -1.77
PDLIM5-208	ENST00000504489	PRO0628	Q9UI54	55 aa		3.96	□□□□□ -1.78
PDLIM5-208	ENST00000504489	KRTAP5-4	Q6L8H1	288 aa		3.95	□□□□□ -1.78
PDLIM5-208	ENST00000504489	KRTAP4-4	Q9BYR3	166 aa		3.93	□□□□□ -1.78
PDLIM5-208	ENST00000504489	NDUFAF8	A1L188	74 aa		3.84	□□□□□ -1.79
PDLIM5-208	ENST00000504489	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.82	□□□□□ -1.8
PDLIM5-208	ENST00000504489	PRAC1	Q96KF2	57 aa		3.8	□□□□□ -1.8
PDLIM5-208	ENST00000504489	MT4	P47944	62 aa		3.74	□□□□□ -1.81
PDLIM5-208	ENST00000504489	KTN1-AS1	Q86SY8	53 aa		3.72	□□□□□ -1.81
PDLIM5-208	ENST00000504489	OBSCN	Q5VST9	7968 aa		3.7	□□□□□ -1.82
PDLIM5-208	ENST00000504489	KRTAP12-4	P60329	112 aa		3.65	□□□□□ -1.83
PDLIM5-208	ENST00000504489	HMCN1	Q96RW7	5635 aa		3.64	□□□□□ -1.83
PDLIM5-208	ENST00000504489	SPRR5	A0A1B0GTR4	108 aa		3.63	□□□□□ -1.83
PDLIM5-208	ENST00000504489	MT1A	P04731	61 aa		3.63	□□□□□ -1.83
PDLIM5-208	ENST00000504489	LCE3E	Q5T5B0	92 aa		3.6	□□□□□ -1.83
PDLIM5-208	ENST00000504489	KRTAP20-2	Q3LI61	65 aa		3.59	□□□□□ -1.83
PDLIM5-208	ENST00000504489	KRTAP6-1	Q3LI64	71 aa		3.58	□□□□□ -1.84
PDLIM5-208	ENST00000504489	SYNE1	Q8NF91	8797 aa	Known RBP	3.58	□□□□□ -1.84
PDLIM5-208	ENST00000504489	AHNAK2	Q8IVF2	5795 aa		3.45	□□□□□ -1.86
PDLIM5-208	ENST00000504489	KRTAP5-2	Q701N4	177 aa		3.42	□□□□□ -1.86
PDLIM5-208	ENST00000504489	KRTAP5-10	Q6L8G5	202 aa		3.38	□□□□□ -1.87
PDLIM5-208	ENST00000504489	KRTAP6-2	Q3LI66	62 aa		3.37	□□□□□ -1.87
PDLIM5-208	ENST00000504489	GPR98	Q8WXG9	6306 aa		3.36	□□□□□ -1.87
PDLIM5-208	ENST00000504489	KRTAP5-7	Q6L8G8	165 aa		3.22	□□□□□ -1.89
PDLIM5-208	ENST00000504489	LUZP6	Q538Z0	58 aa		3.19	□□□□□ -1.9
PDLIM5-208	ENST00000504489	KRTAP5-8	O75690	187 aa		3.11	□□□□□ -1.91
PDLIM5-208	ENST00000504489	LCE1C	Q5T751	118 aa		3.08	□□□□□ -1.92
PDLIM5-208	ENST00000504489	LCE1B	Q5T7P3	118 aa		3.08	□□□□□ -1.92
PDLIM5-208	ENST00000504489	LCE3D	Q9BYE3	92 aa		2.91	□□□□□ -1.94
PDLIM5-208	ENST00000504489	MUC5AC	P98088	5654 aa		2.86	□□□□□ -1.95
PDLIM5-208	ENST00000504489	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.74	□□□□□ -1.97
PDLIM5-208	ENST00000504489	AHNAK	Q09666	5890 aa	Known RBP	2.71	□□□□□ -1.98
PDLIM5-208	ENST00000504489	MUC19	Q7Z5P9	8384 aa		2.58	□□□□□ -2
PDLIM5-208	ENST00000504489	KRTAP21-2	Q3LI59	83 aa		2.37	□□□□□ -2.03
PDLIM5-208	ENST00000504489	INE1	O15225	51 aa		2.32	□□□□□ -2.04
PDLIM5-208	ENST00000504489	PRM1	P04553	51 aa		2.22	□□□□□ -2.05
PDLIM5-208	ENST00000504489	PHGR1	C9JFL3	82 aa		2.14	□□□□□ -2.07
PDLIM5-208	ENST00000504489	KRTAP21-1	Q3LI58	79 aa		1.48	□□□□□ -2.17
PDLIM5-208	ENST00000504489	MUC16	Q8WXI7	14507 aa		1.42	□□□□□ -2.18

Retrieved 77 of 20,778 RNA–protein pairs in 92.1 ms