RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 KRTAP2-3P0C7H8 128 aa5.7□□□□□ -1.5
CPNE1-228ENST00000498814 KRTAP2-4Q9BYR9 128 aa5.7□□□□□ -1.5
CPNE1-228ENST00000498814 KRTAP19-3Q7Z4W3 81 aa5.66□□□□□ -1.5
CPNE1-228ENST00000498814 LCE5AQ5TCM9 118 aa5.64□□□□□ -1.51
CPNE1-228ENST00000498814 MT1GP13640 62 aa5.58□□□□□ -1.52
CPNE1-228ENST00000498814 ROMO1P60602 79 aa5.57□□□□□ -1.52
CPNE1-228ENST00000498814 KRTAP12-3P60328 96 aa5.56□□□□□ -1.52
CPNE1-228ENST00000498814 MT1LQ93083 61 aa5.56□□□□□ -1.52
CPNE1-228ENST00000498814 KRTAP23-1A1A580 65 aa5.55□□□□□ -1.52
CPNE1-228ENST00000498814 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
CPNE1-228ENST00000498814 KRTAP2-2Q9BYT5 123 aa5.53□□□□□ -1.52
CPNE1-228ENST00000498814 KRTAP2-1Q9BYU5 128 aa5.53□□□□□ -1.52
CPNE1-228ENST00000498814 PP632Q6XCG6 107 aa5.52□□□□□ -1.53
CPNE1-228ENST00000498814 KRTAP19-4Q3LI73 84 aa5.5□□□□□ -1.53
CPNE1-228ENST00000498814 MT1MQ8N339 61 aa5.47□□□□□ -1.53
CPNE1-228ENST00000498814 BRK1Q8WUW1 75 aa5.4□□□□□ -1.54
CPNE1-228ENST00000498814 DSTQ03001 7570 aaKnown RBP5.38□□□□□ -1.55
CPNE1-228ENST00000498814 KRTAP4-3Q9BYR4 195 aa5.31□□□□□ -1.56
CPNE1-228ENST00000498814 KRTAP15-1Q3LI76 137 aa5.3□□□□□ -1.56
CPNE1-228ENST00000498814 KRTAP4-12Q9BQ66 201 aa5.29□□□□□ -1.56
CPNE1-228ENST00000498814 KRTAP4-7Q9BYR0 210 aa5.29□□□□□ -1.56
CPNE1-228ENST00000498814 SVIPQ8NHG7 77 aa5.26□□□□□ -1.57
CPNE1-228ENST00000498814 LCE3CQ5T5A8 94 aa5.16□□□□□ -1.58
CPNE1-228ENST00000498814 PMAIP1Q13794 54 aa5.1□□□□□ -1.59
CPNE1-228ENST00000498814 LCE4AQ5TA78 99 aa5.1□□□□□ -1.59
CPNE1-228ENST00000498814 KRTAP5-4Q6L8H1 288 aa5.06□□□□□ -1.6
CPNE1-228ENST00000498814 KRTAP4-9Q9BYQ8 210 aa5.06□□□□□ -1.6
CPNE1-228ENST00000498814 KRTAP9-9Q9BYP9 154 aa5.04□□□□□ -1.6
CPNE1-228ENST00000498814 KRTAP9-4Q9BYQ2 154 aa5.04□□□□□ -1.6
CPNE1-228ENST00000498814 KRTAP5-5Q701N2 237 aaPredicted RBP5□□□□□ -1.61
CPNE1-228ENST00000498814 LCE1DQ5T752 114 aa4.99□□□□□ -1.61
CPNE1-228ENST00000498814 PRO0628Q9UI54 55 aa4.97□□□□□ -1.61
CPNE1-228ENST00000498814 MT4P47944 62 aa4.96□□□□□ -1.62
CPNE1-228ENST00000498814 HMCN1Q96RW7 5635 aa4.92□□□□□ -1.62
CPNE1-228ENST00000498814 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
CPNE1-228ENST00000498814 PRAC1Q96KF2 57 aa4.83□□□□□ -1.64
CPNE1-228ENST00000498814 KRTAP12-4P60329 112 aa4.79□□□□□ -1.64
CPNE1-228ENST00000498814 SPRR5A0A1B0GTR4 108 aa4.77□□□□□ -1.65
CPNE1-228ENST00000498814 MT1AP04731 61 aa4.74□□□□□ -1.65
CPNE1-228ENST00000498814 KRTAP20-2Q3LI61 65 aa4.74□□□□□ -1.65
CPNE1-228ENST00000498814 SYNE1Q8NF91 8797 aaKnown RBP4.72□□□□□ -1.65
CPNE1-228ENST00000498814 KTN1-AS1Q86SY8 53 aa4.69□□□□□ -1.66
CPNE1-228ENST00000498814 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
CPNE1-228ENST00000498814 GPR98Q8WXG9 6306 aa4.64□□□□□ -1.67
CPNE1-228ENST00000498814 AHNAK2Q8IVF2 5795 aa4.64□□□□□ -1.67
CPNE1-228ENST00000498814 KRTAP5-3Q6L8H2 238 aa4.6□□□□□ -1.67
CPNE1-228ENST00000498814 KRTAP4-11Q9BYQ6 195 aa4.57□□□□□ -1.68
CPNE1-228ENST00000498814 KRTAP4-2Q9BYR5 136 aa4.53□□□□□ -1.68
CPNE1-228ENST00000498814 KRTAP5-10Q6L8G5 202 aa4.49□□□□□ -1.69
CPNE1-228ENST00000498814 KRTAP5-2Q701N4 177 aa4.49□□□□□ -1.69
CPNE1-228ENST00000498814 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
CPNE1-228ENST00000498814 MT3P25713 68 aa4.32□□□□□ -1.72
CPNE1-228ENST00000498814 KRTAP5-7Q6L8G8 165 aa4.29□□□□□ -1.72
CPNE1-228ENST00000498814 KRTAP5-8O75690 187 aa4.11□□□□□ -1.75
CPNE1-228ENST00000498814 OBSCNQ5VST9 7968 aa4.08□□□□□ -1.76
CPNE1-228ENST00000498814 LUZP6Q538Z0 58 aa4.05□□□□□ -1.76
CPNE1-228ENST00000498814 KRTAP5-1Q6L8H4 278 aa3.96□□□□□ -1.78
CPNE1-228ENST00000498814 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
CPNE1-228ENST00000498814 MUC5ACP98088 5654 aa3.87□□□□□ -1.79
CPNE1-228ENST00000498814 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
CPNE1-228ENST00000498814 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
CPNE1-228ENST00000498814 A0A0A0MQY5 61 aa3.75□□□□□ -1.81
CPNE1-228ENST00000498814 AHNAKQ09666 5890 aaKnown RBP3.75□□□□□ -1.81
CPNE1-228ENST00000498814 LCE1CQ5T751 118 aa3.63□□□□□ -1.83
CPNE1-228ENST00000498814 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
CPNE1-228ENST00000498814 LCE3EQ5T5B0 92 aa3.6□□□□□ -1.83
CPNE1-228ENST00000498814 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
CPNE1-228ENST00000498814 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.35□□□□□ -1.87
CPNE1-228ENST00000498814 KRTAP5-11Q6L8G4 156 aa3.26□□□□□ -1.89
CPNE1-228ENST00000498814 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
CPNE1-228ENST00000498814 KRTAP21-2Q3LI59 83 aa3.09□□□□□ -1.91
CPNE1-228ENST00000498814 INE1O15225 51 aa2.89□□□□□ -1.95
CPNE1-228ENST00000498814 PRM1P04553 51 aa2.85□□□□□ -1.95
CPNE1-228ENST00000498814 PHGR1C9JFL3 82 aa2.8□□□□□ -1.96
CPNE1-228ENST00000498814 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
CPNE1-228ENST00000498814 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
CPNE1-228ENST00000498814 KRTAP21-1Q3LI58 79 aa1.97□□□□□ -2.09
CPNE1-228ENST00000498814 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 71.1 ms