RNA–Protein interactions for RNA: ENST00000498711.1

CLTC-209, Transcript of clathrin heavy chain, humanhuman

TSL 1 (best)

Gene CLTC, Length 2,941 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTC-209ENST00000498711 PLAC4Q8WY50 150 aa1.74□□□□□ -2.13
CLTC-209ENST00000498711 LCE3EQ5T5B0 92 aa1.73□□□□□ -2.13
CLTC-209ENST00000498711 SPRR5A0A1B0GTR4 108 aa1.73□□□□□ -2.13
CLTC-209ENST00000498711 MT1HP80294 61 aa1.71□□□□□ -2.14
CLTC-209ENST00000498711 FLGP20930 4061 aaPredicted RBP1.69□□□□□ -2.14
CLTC-209ENST00000498711 KRTAP5-1Q6L8H4 278 aa1.66□□□□□ -2.14
CLTC-209ENST00000498711 CRCT1Q9UGL9 99 aa1.66□□□□□ -2.14
CLTC-209ENST00000498711 SPRR2GQ9BYE4 73 aa1.65□□□□□ -2.14
CLTC-209ENST00000498711 TNP1P09430 55 aa1.64□□□□□ -2.15
CLTC-209ENST00000498711 KRTAP4-4Q9BYR3 166 aa1.64□□□□□ -2.15
CLTC-209ENST00000498711 PRO2289Q9P1D8 64 aa1.61□□□□□ -2.15
CLTC-209ENST00000498711 M0R2T5 61 aa1.6□□□□□ -2.15
CLTC-209ENST00000498711 KRTAP19-8Q3LI54 63 aa1.6□□□□□ -2.15
CLTC-209ENST00000498711 USH2AO75445 5202 aa1.59□□□□□ -2.15
CLTC-209ENST00000498711 MT2AP02795 61 aa1.59□□□□□ -2.15
CLTC-209ENST00000498711 KRTAP9-6A8MVA2 160 aa1.58□□□□□ -2.16
CLTC-209ENST00000498711 KRTAP19-6Q3LI70 58 aa1.58□□□□□ -2.16
CLTC-209ENST00000498711 KRTAP8-1Q8IUC2 63 aa1.58□□□□□ -2.16
CLTC-209ENST00000498711 FSIP2Q5CZC0 6907 aa1.57□□□□□ -2.16
CLTC-209ENST00000498711 LCE3AQ5TA76 89 aa1.56□□□□□ -2.16
CLTC-209ENST00000498711 MT1FP04733 61 aa1.55□□□□□ -2.16
CLTC-209ENST00000498711 MT1BP07438 61 aa1.54□□□□□ -2.16
CLTC-209ENST00000498711 MT1XP80297 61 aa1.53□□□□□ -2.16
CLTC-209ENST00000498711 LCE3DQ9BYE3 92 aa1.53□□□□□ -2.16
CLTC-209ENST00000498711 KRTAP5-8O75690 187 aa1.52□□□□□ -2.17
CLTC-209ENST00000498711 KRTAP6-3Q3LI67 103 aa1.52□□□□□ -2.17
CLTC-209ENST00000498711 INE1O15225 51 aa1.52□□□□□ -2.17
CLTC-209ENST00000498711 KRTAP10-10P60014 251 aa1.52□□□□□ -2.17
CLTC-209ENST00000498711 SSPOA2VEC9 5147 aa1.52□□□□□ -2.17
CLTC-209ENST00000498711 KRTAP5-2Q701N4 177 aa1.51□□□□□ -2.17
CLTC-209ENST00000498711 KMT2DO14686 5537 aa1.5□□□□□ -2.17
CLTC-209ENST00000498711 KRTAP12-3P60328 96 aa1.48□□□□□ -2.17
CLTC-209ENST00000498711 KRTAP4-3Q9BYR4 195 aa1.47□□□□□ -2.17
CLTC-209ENST00000498711 KRTAP5-5Q701N2 237 aaPredicted RBP1.46□□□□□ -2.17
CLTC-209ENST00000498711 AHNAKQ09666 5890 aaKnown RBP1.43□□□□□ -2.18
CLTC-209ENST00000498711 FCGBPQ9Y6R7 5405 aaPredicted RBP1.42□□□□□ -2.18
CLTC-209ENST00000498711 NEBP20929 6669 aa1.41□□□□□ -2.18
CLTC-209ENST00000498711 KRTAP2-3P0C7H8 128 aa1.41□□□□□ -2.18
CLTC-209ENST00000498711 KRTAP19-5Q3LI72 72 aa1.41□□□□□ -2.18
CLTC-209ENST00000498711 KRTAP2-4Q9BYR9 128 aa1.41□□□□□ -2.18
CLTC-209ENST00000498711 KRTAP2-1Q9BYU5 128 aa1.41□□□□□ -2.18
CLTC-209ENST00000498711 MACF1Q9UPN3 7388 aaKnown RBP1.37□□□□□ -2.19
CLTC-209ENST00000498711 KRTAP20-1Q3LI63 56 aa1.37□□□□□ -2.19
CLTC-209ENST00000498711 KRTAP19-7Q3SYF9 63 aa1.37□□□□□ -2.19
CLTC-209ENST00000498711 SYNE2Q8WXH0 6885 aaKnown RBP1.36□□□□□ -2.19
CLTC-209ENST00000498711 MUC12Q9UKN1 5478 aa1.34□□□□□ -2.19
CLTC-209ENST00000498711 MT1LQ93083 61 aa1.33□□□□□ -2.2
CLTC-209ENST00000498711 MT1EP04732 61 aa1.33□□□□□ -2.2
CLTC-209ENST00000498711 DSTQ03001 7570 aaKnown RBP1.32□□□□□ -2.2
CLTC-209ENST00000498711 MDN1Q9NU22 5596 aa1.29□□□□□ -2.2
CLTC-209ENST00000498711 SPRR2EP22531 72 aa1.29□□□□□ -2.2
CLTC-209ENST00000498711 SPRR2BP35325 72 aa1.29□□□□□ -2.2
CLTC-209ENST00000498711 SPRR2AP35326 72 aa1.29□□□□□ -2.2
CLTC-209ENST00000498711 SPRR2FQ96RM1 72 aa1.28□□□□□ -2.2
CLTC-209ENST00000498711 SPRR2DP22532 72 aa1.26□□□□□ -2.21
CLTC-209ENST00000498711 LCE1CQ5T751 118 aa1.23□□□□□ -2.21
CLTC-209ENST00000498711 LCE1BQ5T7P3 118 aa1.23□□□□□ -2.21
CLTC-209ENST00000498711 MT1GP13640 62 aa1.22□□□□□ -2.21
CLTC-209ENST00000498711 KRTAP19-3Q7Z4W3 81 aa1.22□□□□□ -2.21
CLTC-209ENST00000498711 MT1MQ8N339 61 aa1.22□□□□□ -2.21
CLTC-209ENST00000498711 MT1AP04731 61 aa1.2□□□□□ -2.22
CLTC-209ENST00000498711 AHNAK2Q8IVF2 5795 aa1.19□□□□□ -2.22
CLTC-209ENST00000498711 KRTAP12-4P60329 112 aa1.17□□□□□ -2.22
CLTC-209ENST00000498711 SYNE1Q8NF91 8797 aaKnown RBP1.14□□□□□ -2.23
CLTC-209ENST00000498711 OBSCNQ5VST9 7968 aa1.13□□□□□ -2.23
CLTC-209ENST00000498711 KRTAP6-1Q3LI64 71 aa1.11□□□□□ -2.23
CLTC-209ENST00000498711 KRTAP5-7Q6L8G8 165 aa1.1□□□□□ -2.23
CLTC-209ENST00000498711 KRTAP5-10Q6L8G5 202 aa1.09□□□□□ -2.24
CLTC-209ENST00000498711 KRTAP20-2Q3LI61 65 aa1.05□□□□□ -2.24
CLTC-209ENST00000498711 MUC5ACP98088 5654 aa1.04□□□□□ -2.24
CLTC-209ENST00000498711 PRM1P04553 51 aa1.03□□□□□ -2.24
CLTC-209ENST00000498711 MT4P47944 62 aa1.02□□□□□ -2.25
CLTC-209ENST00000498711 KRTAP6-2Q3LI66 62 aa1.01□□□□□ -2.25
CLTC-209ENST00000498711 MUC19Q7Z5P9 8384 aa0.91□□□□□ -2.26
CLTC-209ENST00000498711 KRTAP21-2Q3LI59 83 aa0.83□□□□□ -2.28
CLTC-209ENST00000498711 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
CLTC-209ENST00000498711 PHGR1C9JFL3 82 aa0.63□□□□□ -2.31
CLTC-209ENST00000498711 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 10.6 ms