RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 KRTAP19-6Q3LI70 58 aa2.23□□□□□ -2.05
USP54-216ENST00000498143 MDN1Q9NU22 5596 aa2.22□□□□□ -2.05
USP54-216ENST00000498143 MT1FP04733 61 aa2.21□□□□□ -2.06
USP54-216ENST00000498143 PKD1P98161 4303 aa2.21□□□□□ -2.06
USP54-216ENST00000498143 MT4P47944 62 aa2.2□□□□□ -2.06
USP54-216ENST00000498143 USH2AO75445 5202 aa2.2□□□□□ -2.06
USP54-216ENST00000498143 HECTD4Q9Y4D8 3996 aa2.17□□□□□ -2.06
USP54-216ENST00000498143 DNAH2Q9P225 4427 aa2.17□□□□□ -2.06
USP54-216ENST00000498143 KRTAP4-9Q9BYQ8 210 aa2.16□□□□□ -2.06
USP54-216ENST00000498143 KRTAP10-7P60409 375 aaPredicted RBP2.15□□□□□ -2.06
USP54-216ENST00000498143 DNAH8Q96JB1 4490 aa2.14□□□□□ -2.07
USP54-216ENST00000498143 KRTAP4-7Q9BYR0 210 aa2.14□□□□□ -2.07
USP54-216ENST00000498143 SSPOA2VEC9 5147 aa2.14□□□□□ -2.07
USP54-216ENST00000498143 KRTAP4-11Q9BYQ6 195 aa2.13□□□□□ -2.07
USP54-216ENST00000498143 KRTAP9-8Q9BYQ0 159 aa2.11□□□□□ -2.07
USP54-216ENST00000498143 FCGBPQ9Y6R7 5405 aaPredicted RBP2.11□□□□□ -2.07
USP54-216ENST00000498143 TNXBP22105 4242 aa2.1□□□□□ -2.07
USP54-216ENST00000498143 KRTAP12-4P60329 112 aa2.06□□□□□ -2.08
USP54-216ENST00000498143 SYNE1Q8NF91 8797 aaKnown RBP2.04□□□□□ -2.08
USP54-216ENST00000498143 KRTAP10-5P60370 271 aa2.04□□□□□ -2.08
USP54-216ENST00000498143 KRTAP4-2Q9BYR5 136 aa2.04□□□□□ -2.08
USP54-216ENST00000498143 LCE1AQ5T7P2 110 aa2.01□□□□□ -2.09
USP54-216ENST00000498143 LPAP08519 4548 aa1.99□□□□□ -2.09
USP54-216ENST00000498143 MUC17Q685J3 4493 aa1.98□□□□□ -2.09
USP54-216ENST00000498143 LCE3AQ5TA76 89 aa1.96□□□□□ -2.1
USP54-216ENST00000498143 KRTAP12-3P60328 96 aa1.96□□□□□ -2.1
USP54-216ENST00000498143 AHNAK2Q8IVF2 5795 aa1.95□□□□□ -2.1
USP54-216ENST00000498143 LCE3CQ5T5A8 94 aa1.94□□□□□ -2.1
USP54-216ENST00000498143 KRTAP19-2Q3LHN2 52 aa1.93□□□□□ -2.1
USP54-216ENST00000498143 HMCN1Q96RW7 5635 aa1.91□□□□□ -2.1
USP54-216ENST00000498143 KRTAP10-12P60413 245 aa1.91□□□□□ -2.1
USP54-216ENST00000498143 AHNAKQ09666 5890 aaKnown RBP1.91□□□□□ -2.1
USP54-216ENST00000498143 KRTAP5-9P26371 169 aa1.9□□□□□ -2.11
USP54-216ENST00000498143 OBSCNQ5VST9 7968 aa1.9□□□□□ -2.11
USP54-216ENST00000498143 KRTAP5-3Q6L8H2 238 aa1.87□□□□□ -2.11
USP54-216ENST00000498143 LCE1FQ5T754 118 aa1.86□□□□□ -2.11
USP54-216ENST00000498143 SPRR2GQ9BYE4 73 aa1.84□□□□□ -2.11
USP54-216ENST00000498143 MT1BP07438 61 aa1.82□□□□□ -2.12
USP54-216ENST00000498143 KRTAP19-8Q3LI54 63 aa1.82□□□□□ -2.12
USP54-216ENST00000498143 MT1GP13640 62 aa1.8□□□□□ -2.12
USP54-216ENST00000498143 MUC12Q9UKN1 5478 aa1.8□□□□□ -2.12
USP54-216ENST00000498143 KRTAP19-3Q7Z4W3 81 aa1.78□□□□□ -2.12
USP54-216ENST00000498143 LCE3EQ5T5B0 92 aa1.74□□□□□ -2.13
USP54-216ENST00000498143 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
USP54-216ENST00000498143 LCE1EQ5T753 118 aa1.72□□□□□ -2.13
USP54-216ENST00000498143 MUC5BQ9HC84 5762 aaPredicted RBP1.71□□□□□ -2.14
USP54-216ENST00000498143 FLGP20930 4061 aaPredicted RBP1.7□□□□□ -2.14
USP54-216ENST00000498143 KRTAP19-5Q3LI72 72 aa1.67□□□□□ -2.14
USP54-216ENST00000498143 MT1XP80297 61 aa1.66□□□□□ -2.14
USP54-216ENST00000498143 LCE3DQ9BYE3 92 aa1.66□□□□□ -2.14
USP54-216ENST00000498143 KRTAP5-10Q6L8G5 202 aa1.65□□□□□ -2.15
USP54-216ENST00000498143 LCE1BQ5T7P3 118 aa1.65□□□□□ -2.15
USP54-216ENST00000498143 PRM1P04553 51 aa1.62□□□□□ -2.15
USP54-216ENST00000498143 LCE1CQ5T751 118 aa1.59□□□□□ -2.16
USP54-216ENST00000498143 MT1MQ8N339 61 aa1.58□□□□□ -2.16
USP54-216ENST00000498143 MT1EP04732 61 aa1.57□□□□□ -2.16
USP54-216ENST00000498143 KRTAP20-2Q3LI61 65 aa1.57□□□□□ -2.16
USP54-216ENST00000498143 KRTAP5-4Q6L8H1 288 aa1.54□□□□□ -2.16
USP54-216ENST00000498143 MUC5ACP98088 5654 aa1.53□□□□□ -2.16
USP54-216ENST00000498143 KRTAP5-8O75690 187 aa1.51□□□□□ -2.17
USP54-216ENST00000498143 KRTAP4-3Q9BYR4 195 aa1.49□□□□□ -2.17
USP54-216ENST00000498143 MUC19Q7Z5P9 8384 aa1.48□□□□□ -2.17
USP54-216ENST00000498143 MT1LQ93083 61 aa1.47□□□□□ -2.17
USP54-216ENST00000498143 PHGR1C9JFL3 82 aa1.45□□□□□ -2.18
USP54-216ENST00000498143 KRTAP5-11Q6L8G4 156 aa1.42□□□□□ -2.18
USP54-216ENST00000498143 KRTAP9-6A8MVA2 160 aa1.42□□□□□ -2.18
USP54-216ENST00000498143 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
USP54-216ENST00000498143 KRTAP19-7Q3SYF9 63 aa1.38□□□□□ -2.19
USP54-216ENST00000498143 MT1AP04731 61 aa1.36□□□□□ -2.19
USP54-216ENST00000498143 KRTAP5-5Q701N2 237 aaPredicted RBP1.35□□□□□ -2.19
USP54-216ENST00000498143 KRTAP5-1Q6L8H4 278 aa1.24□□□□□ -2.21
USP54-216ENST00000498143 KRTAP6-1Q3LI64 71 aa1.23□□□□□ -2.21
USP54-216ENST00000498143 KRTAP5-2Q701N4 177 aa1.23□□□□□ -2.21
USP54-216ENST00000498143 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.2□□□□□ -2.22
USP54-216ENST00000498143 KRTAP4-4Q9BYR3 166 aa1.08□□□□□ -2.24
USP54-216ENST00000498143 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
USP54-216ENST00000498143 KRTAP21-2Q3LI59 83 aa0.86□□□□□ -2.27
USP54-216ENST00000498143 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 42.4 ms