RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 KRTAP2-2Q9BYT5 123 aa5.91□□□□□ -1.46
MSH5-SAPCD1-206ENST00000491552 KRTAP2-1Q9BYU5 128 aa5.91□□□□□ -1.46
MSH5-SAPCD1-206ENST00000491552 KRTAP25-1Q3LHN0 102 aa5.87□□□□□ -1.47
MSH5-SAPCD1-206ENST00000491552 MT1GP13640 62 aa5.82□□□□□ -1.48
MSH5-SAPCD1-206ENST00000491552 MT1LQ93083 61 aa5.82□□□□□ -1.48
MSH5-SAPCD1-206ENST00000491552 PP632Q6XCG6 107 aa5.79□□□□□ -1.48
MSH5-SAPCD1-206ENST00000491552 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
MSH5-SAPCD1-206ENST00000491552 CDC42SE1Q9NRR8 79 aa5.76□□□□□ -1.49
MSH5-SAPCD1-206ENST00000491552 MT1MQ8N339 61 aa5.74□□□□□ -1.49
MSH5-SAPCD1-206ENST00000491552 DSTQ03001 7570 aaKnown RBP5.66□□□□□ -1.5
MSH5-SAPCD1-206ENST00000491552 KRTAP23-1A1A580 65 aa5.66□□□□□ -1.5
MSH5-SAPCD1-206ENST00000491552 ROMO1P60602 79 aa5.65□□□□□ -1.5
MSH5-SAPCD1-206ENST00000491552 KRTAP4-3Q9BYR4 195 aa5.59□□□□□ -1.51
MSH5-SAPCD1-206ENST00000491552 KRTAP4-7Q9BYR0 210 aa5.53□□□□□ -1.52
MSH5-SAPCD1-206ENST00000491552 KRTAP15-1Q3LI76 137 aa5.47□□□□□ -1.53
MSH5-SAPCD1-206ENST00000491552 KRTAP19-4Q3LI73 84 aa5.45□□□□□ -1.54
MSH5-SAPCD1-206ENST00000491552 KRTAP4-9Q9BYQ8 210 aa5.41□□□□□ -1.54
MSH5-SAPCD1-206ENST00000491552 LCE4AQ5TA78 99 aa5.4□□□□□ -1.54
MSH5-SAPCD1-206ENST00000491552 BRK1Q8WUW1 75 aa5.38□□□□□ -1.55
MSH5-SAPCD1-206ENST00000491552 KRTAP5-4Q6L8H1 288 aa5.34□□□□□ -1.55
MSH5-SAPCD1-206ENST00000491552 LCE3CQ5T5A8 94 aa5.33□□□□□ -1.56
MSH5-SAPCD1-206ENST00000491552 LCE1DQ5T752 114 aa5.33□□□□□ -1.56
MSH5-SAPCD1-206ENST00000491552 MT4P47944 62 aa5.3□□□□□ -1.56
MSH5-SAPCD1-206ENST00000491552 KRTAP5-5Q701N2 237 aaPredicted RBP5.24□□□□□ -1.57
MSH5-SAPCD1-206ENST00000491552 LOC100996750A0A140TA64 210 aa5.23□□□□□ -1.57
MSH5-SAPCD1-206ENST00000491552 KRTAP4-6Q9BYQ5 205 aa5.17□□□□□ -1.58
MSH5-SAPCD1-206ENST00000491552 HMCN1Q96RW7 5635 aa5.15□□□□□ -1.58
MSH5-SAPCD1-206ENST00000491552 PMAIP1Q13794 54 aa5.06□□□□□ -1.6
MSH5-SAPCD1-206ENST00000491552 KRTAP12-4P60329 112 aa5.05□□□□□ -1.6
MSH5-SAPCD1-206ENST00000491552 SPRR5A0A1B0GTR4 108 aa5.02□□□□□ -1.61
MSH5-SAPCD1-206ENST00000491552 KRTAP20-2Q3LI61 65 aa5.02□□□□□ -1.61
MSH5-SAPCD1-206ENST00000491552 KRTAP9-6A8MVA2 160 aa5.01□□□□□ -1.61
MSH5-SAPCD1-206ENST00000491552 GPR98Q8WXG9 6306 aa4.99□□□□□ -1.61
MSH5-SAPCD1-206ENST00000491552 MT1AP04731 61 aa4.95□□□□□ -1.62
MSH5-SAPCD1-206ENST00000491552 SYNE1Q8NF91 8797 aaKnown RBP4.92□□□□□ -1.62
MSH5-SAPCD1-206ENST00000491552 KRTAP6-1Q3LI64 71 aa4.9□□□□□ -1.63
MSH5-SAPCD1-206ENST00000491552 AHNAK2Q8IVF2 5795 aa4.88□□□□□ -1.63
MSH5-SAPCD1-206ENST00000491552 KRTAP5-3Q6L8H2 238 aa4.86□□□□□ -1.63
MSH5-SAPCD1-206ENST00000491552 PRO0628Q9UI54 55 aa4.86□□□□□ -1.63
MSH5-SAPCD1-206ENST00000491552 PRAC1Q96KF2 57 aa4.84□□□□□ -1.63
MSH5-SAPCD1-206ENST00000491552 KRTAP5-10Q6L8G5 202 aa4.83□□□□□ -1.64
MSH5-SAPCD1-206ENST00000491552 KRTAP9-4Q9BYQ2 154 aa4.76□□□□□ -1.65
MSH5-SAPCD1-206ENST00000491552 KRTAP5-2Q701N4 177 aa4.72□□□□□ -1.65
MSH5-SAPCD1-206ENST00000491552 KRTAP6-2Q3LI66 62 aa4.64□□□□□ -1.67
MSH5-SAPCD1-206ENST00000491552 KRTAP5-7Q6L8G8 165 aa4.62□□□□□ -1.67
MSH5-SAPCD1-206ENST00000491552 KTN1-AS1Q86SY8 53 aa4.62□□□□□ -1.67
MSH5-SAPCD1-206ENST00000491552 KRTAP4-12Q9BQ66 201 aa4.59□□□□□ -1.67
MSH5-SAPCD1-206ENST00000491552 H3BS24 57 aa4.54□□□□□ -1.68
MSH5-SAPCD1-206ENST00000491552 MT3P25713 68 aa4.52□□□□□ -1.69
MSH5-SAPCD1-206ENST00000491552 KRTAP4-11Q9BYQ6 195 aa4.52□□□□□ -1.69
MSH5-SAPCD1-206ENST00000491552 KRTAP9-9Q9BYP9 154 aa4.46□□□□□ -1.7
MSH5-SAPCD1-206ENST00000491552 SVIPQ8NHG7 77 aa4.42□□□□□ -1.7
MSH5-SAPCD1-206ENST00000491552 KRTAP5-8O75690 187 aa4.37□□□□□ -1.71
MSH5-SAPCD1-206ENST00000491552 OBSCNQ5VST9 7968 aa4.3□□□□□ -1.72
MSH5-SAPCD1-206ENST00000491552 KRTAP5-1Q6L8H4 278 aa4.19□□□□□ -1.74
MSH5-SAPCD1-206ENST00000491552 LCE1EQ5T753 118 aa4.09□□□□□ -1.75
MSH5-SAPCD1-206ENST00000491552 LUZP6Q538Z0 58 aa4.06□□□□□ -1.76
MSH5-SAPCD1-206ENST00000491552 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
MSH5-SAPCD1-206ENST00000491552 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
MSH5-SAPCD1-206ENST00000491552 MUC5BQ9HC84 5762 aaPredicted RBP3.97□□□□□ -1.77
MSH5-SAPCD1-206ENST00000491552 AHNAKQ09666 5890 aaKnown RBP3.91□□□□□ -1.78
MSH5-SAPCD1-206ENST00000491552 LCE3DQ9BYE3 92 aa3.89□□□□□ -1.79
MSH5-SAPCD1-206ENST00000491552 LCE1BQ5T7P3 118 aa3.84□□□□□ -1.79
MSH5-SAPCD1-206ENST00000491552 LCE1CQ5T751 118 aa3.8□□□□□ -1.8
MSH5-SAPCD1-206ENST00000491552 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
MSH5-SAPCD1-206ENST00000491552 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
MSH5-SAPCD1-206ENST00000491552 NDUFAF8A1L188 74 aa3.44□□□□□ -1.86
MSH5-SAPCD1-206ENST00000491552 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
MSH5-SAPCD1-206ENST00000491552 LCE1FQ5T754 118 aa3.27□□□□□ -1.89
MSH5-SAPCD1-206ENST00000491552 KRTAP21-2Q3LI59 83 aa3.22□□□□□ -1.89
MSH5-SAPCD1-206ENST00000491552 A0A0A0MQY5 61 aa3.09□□□□□ -1.91
MSH5-SAPCD1-206ENST00000491552 PHGR1C9JFL3 82 aa2.94□□□□□ -1.94
MSH5-SAPCD1-206ENST00000491552 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
MSH5-SAPCD1-206ENST00000491552 PRM1P04553 51 aa2.91□□□□□ -1.94
MSH5-SAPCD1-206ENST00000491552 INE1O15225 51 aa2.8□□□□□ -1.96
MSH5-SAPCD1-206ENST00000491552 MUC19Q7Z5P9 8384 aa2.62□□□□□ -1.99
MSH5-SAPCD1-206ENST00000491552 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
MSH5-SAPCD1-206ENST00000491552 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 8.7 ms