RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 MT1LQ93083 61 aa4.85□□□□□ -1.63
COL6A3-211ENST00000491233 MT4P47944 62 aa4.82□□□□□ -1.64
COL6A3-211ENST00000491233 SMIM26A0A096LP01 95 aa4.81□□□□□ -1.64
COL6A3-211ENST00000491233 A0A1B0GU69 56 aa4.8□□□□□ -1.64
COL6A3-211ENST00000491233 A8MU10 97 aa4.8□□□□□ -1.64
COL6A3-211ENST00000491233 LCE3AQ5TA76 89 aa4.79□□□□□ -1.64
COL6A3-211ENST00000491233 C10orf95Q9H7T3 257 aa4.78□□□□□ -1.64
COL6A3-211ENST00000491233 ANAPC13Q9BS18 74 aa4.77□□□□□ -1.65
COL6A3-211ENST00000491233 KRTAP4-3Q9BYR4 195 aa4.77□□□□□ -1.65
COL6A3-211ENST00000491233 HMCN1Q96RW7 5635 aa4.77□□□□□ -1.65
COL6A3-211ENST00000491233 TNP1P09430 55 aa4.75□□□□□ -1.65
COL6A3-211ENST00000491233 KRTAP5-4Q6L8H1 288 aa4.71□□□□□ -1.66
COL6A3-211ENST00000491233 AHNAK2Q8IVF2 5795 aa4.71□□□□□ -1.66
COL6A3-211ENST00000491233 CCDC179H3BU77 68 aa4.68□□□□□ -1.66
COL6A3-211ENST00000491233 KRTAP15-1Q3LI76 137 aa4.63□□□□□ -1.67
COL6A3-211ENST00000491233 PRR15LQ9BU68 103 aa4.63□□□□□ -1.67
COL6A3-211ENST00000491233 ATP5EP56381 51 aaPredicted RBP4.62□□□□□ -1.67
COL6A3-211ENST00000491233 KRTAP5-10Q6L8G5 202 aa4.61□□□□□ -1.67
COL6A3-211ENST00000491233 KRTAP12-3P60328 96 aa4.59□□□□□ -1.67
COL6A3-211ENST00000491233 LINC01558Q9Y6Z2 57 aa4.58□□□□□ -1.68
COL6A3-211ENST00000491233 TMEM258P61165 79 aa4.49□□□□□ -1.69
COL6A3-211ENST00000491233 UQCR11O14957 56 aa4.48□□□□□ -1.69
COL6A3-211ENST00000491233 KRTAP5-3Q6L8H2 238 aa4.48□□□□□ -1.69
COL6A3-211ENST00000491233 KRTAP20-2Q3LI61 65 aa4.47□□□□□ -1.69
COL6A3-211ENST00000491233 KRTAP5-5Q701N2 237 aaPredicted RBP4.47□□□□□ -1.69
COL6A3-211ENST00000491233 KRTAP5-7Q6L8G8 165 aa4.45□□□□□ -1.7
COL6A3-211ENST00000491233 SPRR5A0A1B0GTR4 108 aa4.41□□□□□ -1.7
COL6A3-211ENST00000491233 KRTAP25-1Q3LHN0 102 aa4.4□□□□□ -1.71
COL6A3-211ENST00000491233 SYNE1Q8NF91 8797 aaKnown RBP4.38□□□□□ -1.71
COL6A3-211ENST00000491233 MIR22HGQ0VDD5 57 aa4.38□□□□□ -1.71
COL6A3-211ENST00000491233 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
COL6A3-211ENST00000491233 K7ERS5 55 aa4.3□□□□□ -1.72
COL6A3-211ENST00000491233 PSPHP1O15172 72 aa4.28□□□□□ -1.72
COL6A3-211ENST00000491233 V9GYY9 64 aa4.26□□□□□ -1.73
COL6A3-211ENST00000491233 Q1T7F1 81 aa4.23□□□□□ -1.73
COL6A3-211ENST00000491233 LCE3CQ5T5A8 94 aa4.2□□□□□ -1.74
COL6A3-211ENST00000491233 MT1AP04731 61 aa4.13□□□□□ -1.75
COL6A3-211ENST00000491233 A6NED7 52 aa4.12□□□□□ -1.75
COL6A3-211ENST00000491233 KRTAP5-2Q701N4 177 aa4.12□□□□□ -1.75
COL6A3-211ENST00000491233 KRTAP6-1Q3LI64 71 aa4.11□□□□□ -1.75
COL6A3-211ENST00000491233 CDC42SE1Q9NRR8 79 aa4.06□□□□□ -1.76
COL6A3-211ENST00000491233 PCP4P48539 62 aa4□□□□□ -1.77
COL6A3-211ENST00000491233 ROMO1P60602 79 aa4□□□□□ -1.77
COL6A3-211ENST00000491233 KRTAP9-6A8MVA2 160 aa3.99□□□□□ -1.77
COL6A3-211ENST00000491233 KRTAP5-8O75690 187 aa3.98□□□□□ -1.77
COL6A3-211ENST00000491233 RPS28P62857 69 aaKnown RBP3.96□□□□□ -1.78
COL6A3-211ENST00000491233 KRTAP6-2Q3LI66 62 aa3.95□□□□□ -1.78
COL6A3-211ENST00000491233 SVIPQ8NHG7 77 aa3.93□□□□□ -1.78
COL6A3-211ENST00000491233 AHNAKQ09666 5890 aaKnown RBP3.9□□□□□ -1.79
COL6A3-211ENST00000491233 OBSCNQ5VST9 7968 aa3.87□□□□□ -1.79
COL6A3-211ENST00000491233 MUC5ACP98088 5654 aa3.87□□□□□ -1.79
COL6A3-211ENST00000491233 MUC5BQ9HC84 5762 aaPredicted RBP3.83□□□□□ -1.8
COL6A3-211ENST00000491233 A0A0A0MQY5 61 aa3.78□□□□□ -1.8
COL6A3-211ENST00000491233 MT3P25713 68 aa3.76□□□□□ -1.81
COL6A3-211ENST00000491233 KRTAP5-1Q6L8H4 278 aa3.71□□□□□ -1.82
COL6A3-211ENST00000491233 KRTAP5-11Q6L8G4 156 aa3.53□□□□□ -1.84
COL6A3-211ENST00000491233 LCE1EQ5T753 118 aa3.48□□□□□ -1.85
COL6A3-211ENST00000491233 BRK1Q8WUW1 75 aa3.46□□□□□ -1.86
COL6A3-211ENST00000491233 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.44□□□□□ -1.86
COL6A3-211ENST00000491233 LCE1BQ5T7P3 118 aa3.32□□□□□ -1.88
COL6A3-211ENST00000491233 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
COL6A3-211ENST00000491233 NDUFAF8A1L188 74 aa3.27□□□□□ -1.89
COL6A3-211ENST00000491233 PMAIP1Q13794 54 aa3.25□□□□□ -1.89
COL6A3-211ENST00000491233 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
COL6A3-211ENST00000491233 PRAC1Q96KF2 57 aa3.17□□□□□ -1.9
COL6A3-211ENST00000491233 PRO0628Q9UI54 55 aa3.14□□□□□ -1.91
COL6A3-211ENST00000491233 LCE3DQ9BYE3 92 aa2.99□□□□□ -1.93
COL6A3-211ENST00000491233 KTN1-AS1Q86SY8 53 aa2.92□□□□□ -1.94
COL6A3-211ENST00000491233 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
COL6A3-211ENST00000491233 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
COL6A3-211ENST00000491233 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
COL6A3-211ENST00000491233 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
COL6A3-211ENST00000491233 LUZP6Q538Z0 58 aa2.68□□□□□ -1.98
COL6A3-211ENST00000491233 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
COL6A3-211ENST00000491233 PRM1P04553 51 aa2.04□□□□□ -2.08
COL6A3-211ENST00000491233 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
COL6A3-211ENST00000491233 INE1O15225 51 aa1.87□□□□□ -2.11
COL6A3-211ENST00000491233 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 57.9 ms