RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 KRTAP19-4Q3LI73 84 aa7.63□□□□□ -1.19
SND1-214ENST00000489417 SPRR2FQ96RM1 72 aa7.62□□□□□ -1.19
SND1-214ENST00000489417 KRTAP5-9P26371 169 aa7.6□□□□□ -1.19
SND1-214ENST00000489417 KRTAP15-1Q3LI76 137 aa7.57□□□□□ -1.2
SND1-214ENST00000489417 LCE3BQ5TA77 95 aa7.56□□□□□ -1.2
SND1-214ENST00000489417 MUC12Q9UKN1 5478 aa7.48□□□□□ -1.21
SND1-214ENST00000489417 NEBP20929 6669 aa7.47□□□□□ -1.21
SND1-214ENST00000489417 MT1LQ93083 61 aa7.46□□□□□ -1.21
SND1-214ENST00000489417 KRTAP9-9Q9BYP9 154 aa7.39□□□□□ -1.23
SND1-214ENST00000489417 KRTAP9-4Q9BYQ2 154 aa7.39□□□□□ -1.23
SND1-214ENST00000489417 KRTAP19-3Q7Z4W3 81 aa7.37□□□□□ -1.23
SND1-214ENST00000489417 LCE4AQ5TA78 99 aa7.34□□□□□ -1.23
SND1-214ENST00000489417 LCE1AQ5T7P2 110 aa7.31□□□□□ -1.24
SND1-214ENST00000489417 MT1GP13640 62 aa7.29□□□□□ -1.24
SND1-214ENST00000489417 SPRR2EP22531 72 aa7.29□□□□□ -1.24
SND1-214ENST00000489417 SPRR2BP35325 72 aa7.29□□□□□ -1.24
SND1-214ENST00000489417 SPRR2AP35326 72 aa7.29□□□□□ -1.24
SND1-214ENST00000489417 LCE5AQ5TCM9 118 aa7.27□□□□□ -1.25
SND1-214ENST00000489417 MDN1Q9NU22 5596 aa7.25□□□□□ -1.25
SND1-214ENST00000489417 LCE3CQ5T5A8 94 aa7.25□□□□□ -1.25
SND1-214ENST00000489417 KRTAP20-1Q3LI63 56 aa7.21□□□□□ -1.25
SND1-214ENST00000489417 MT1MQ8N339 61 aa7.21□□□□□ -1.25
SND1-214ENST00000489417 KRTAP4-7Q9BYR0 210 aa7.17□□□□□ -1.26
SND1-214ENST00000489417 LCE1DQ5T752 114 aa7.1□□□□□ -1.27
SND1-214ENST00000489417 SPRR5A0A1B0GTR4 108 aa7.05□□□□□ -1.28
SND1-214ENST00000489417 KRTAP4-3Q9BYR4 195 aa7.04□□□□□ -1.28
SND1-214ENST00000489417 KRTAP2-3P0C7H8 128 aa7.03□□□□□ -1.28
SND1-214ENST00000489417 SPRR2DP22532 72 aa7.03□□□□□ -1.28
SND1-214ENST00000489417 KRTAP2-4Q9BYR9 128 aa7.03□□□□□ -1.28
SND1-214ENST00000489417 KRTAP4-9Q9BYQ8 210 aa6.84□□□□□ -1.31
SND1-214ENST00000489417 KRTAP9-6A8MVA2 160 aa6.84□□□□□ -1.32
SND1-214ENST00000489417 KRTAP2-2Q9BYT5 123 aa6.81□□□□□ -1.32
SND1-214ENST00000489417 KRTAP2-1Q9BYU5 128 aa6.81□□□□□ -1.32
SND1-214ENST00000489417 LUZP6Q538Z0 58 aa6.72□□□□□ -1.33
SND1-214ENST00000489417 DSTQ03001 7570 aaKnown RBP6.72□□□□□ -1.33
SND1-214ENST00000489417 KRTAP4-11Q9BYQ6 195 aa6.67□□□□□ -1.34
SND1-214ENST00000489417 KRTAP4-2Q9BYR5 136 aa6.59□□□□□ -1.35
SND1-214ENST00000489417 KRTAP5-5Q701N2 237 aaPredicted RBP6.5□□□□□ -1.37
SND1-214ENST00000489417 NDUFAF8A1L188 74 aa6.41□□□□□ -1.38
SND1-214ENST00000489417 MT1AP04731 61 aa6.35□□□□□ -1.39
SND1-214ENST00000489417 KRTAP5-4Q6L8H1 288 aa6.31□□□□□ -1.4
SND1-214ENST00000489417 KRTAP6-1Q3LI64 71 aa6.27□□□□□ -1.41
SND1-214ENST00000489417 SYNE1Q8NF91 8797 aaKnown RBP6.11□□□□□ -1.43
SND1-214ENST00000489417 KRTAP12-4P60329 112 aa6.1□□□□□ -1.43
SND1-214ENST00000489417 MT4P47944 62 aa6.09□□□□□ -1.43
SND1-214ENST00000489417 GPR98Q8WXG9 6306 aa5.98□□□□□ -1.45
SND1-214ENST00000489417 HMCN1Q96RW7 5635 aa5.98□□□□□ -1.45
SND1-214ENST00000489417 KRTAP20-2Q3LI61 65 aa5.91□□□□□ -1.46
SND1-214ENST00000489417 KRTAP6-2Q3LI66 62 aa5.82□□□□□ -1.48
SND1-214ENST00000489417 MT3P25713 68 aa5.75□□□□□ -1.49
SND1-214ENST00000489417 A0A0A0MQY5 61 aa5.74□□□□□ -1.49
SND1-214ENST00000489417 AHNAK2Q8IVF2 5795 aa5.73□□□□□ -1.49
SND1-214ENST00000489417 KRTAP5-2Q701N4 177 aa5.7□□□□□ -1.5
SND1-214ENST00000489417 KRTAP5-3Q6L8H2 238 aa5.69□□□□□ -1.5
SND1-214ENST00000489417 KRTAP5-10Q6L8G5 202 aa5.63□□□□□ -1.51
SND1-214ENST00000489417 KRTAP5-7Q6L8G8 165 aa5.4□□□□□ -1.54
SND1-214ENST00000489417 LCE3DQ9BYE3 92 aa5.4□□□□□ -1.54
SND1-214ENST00000489417 INE1O15225 51 aa5.29□□□□□ -1.56
SND1-214ENST00000489417 LCE3EQ5T5B0 92 aa5.24□□□□□ -1.57
SND1-214ENST00000489417 OBSCNQ5VST9 7968 aa5.22□□□□□ -1.57
SND1-214ENST00000489417 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
SND1-214ENST00000489417 KRTAP5-8O75690 187 aa4.97□□□□□ -1.61
SND1-214ENST00000489417 KRTAP5-1Q6L8H4 278 aa4.94□□□□□ -1.62
SND1-214ENST00000489417 LCE1BQ5T7P3 118 aa4.73□□□□□ -1.65
SND1-214ENST00000489417 MUC5ACP98088 5654 aa4.72□□□□□ -1.65
SND1-214ENST00000489417 MUC5BQ9HC84 5762 aaPredicted RBP4.72□□□□□ -1.65
SND1-214ENST00000489417 LCE1CQ5T751 118 aa4.69□□□□□ -1.66
SND1-214ENST00000489417 AHNAKQ09666 5890 aaKnown RBP4.68□□□□□ -1.66
SND1-214ENST00000489417 LCE1FQ5T754 118 aa4.62□□□□□ -1.67
SND1-214ENST00000489417 KRTAP5-11Q6L8G4 156 aa4.5□□□□□ -1.69
SND1-214ENST00000489417 PRM1P04553 51 aa4.48□□□□□ -1.69
SND1-214ENST00000489417 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.38□□□□□ -1.71
SND1-214ENST00000489417 KRTAP21-2Q3LI59 83 aa4.11□□□□□ -1.75
SND1-214ENST00000489417 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
SND1-214ENST00000489417 PHGR1C9JFL3 82 aa3.57□□□□□ -1.84
SND1-214ENST00000489417 MUC19Q7Z5P9 8384 aa3.09□□□□□ -1.91
SND1-214ENST00000489417 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
SND1-214ENST00000489417 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 252.6 ms