RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 SYNE1Q8NF91 8797 aaKnown RBP2.15□□□□□ -2.06
PTCH1-211ENST00000488809 J3QR89 54 aa2.15□□□□□ -2.07
PTCH1-211ENST00000488809 KRTAP12-1P59990 96 aa2.15□□□□□ -2.07
PTCH1-211ENST00000488809 SPANXA2-OT1Q8N9U9 137 aa2.15□□□□□ -2.07
PTCH1-211ENST00000488809 PCP4L1A6NKN8 68 aa2.14□□□□□ -2.07
PTCH1-211ENST00000488809 KRTAP5-5Q701N2 237 aaPredicted RBP2.14□□□□□ -2.07
PTCH1-211ENST00000488809 A0A1B0GU33 70 aa2.13□□□□□ -2.07
PTCH1-211ENST00000488809 SMIM26A0A096LP01 95 aa2.11□□□□□ -2.07
PTCH1-211ENST00000488809 SNURFQ9Y675 71 aa2.11□□□□□ -2.07
PTCH1-211ENST00000488809 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
PTCH1-211ENST00000488809 KRTAP12-3P60328 96 aa2.1□□□□□ -2.07
PTCH1-211ENST00000488809 COA5Q86WW8 74 aa2.09□□□□□ -2.07
PTCH1-211ENST00000488809 MUC5BQ9HC84 5762 aaPredicted RBP2.08□□□□□ -2.08
PTCH1-211ENST00000488809 MUC5ACP98088 5654 aa2.04□□□□□ -2.08
PTCH1-211ENST00000488809 SERP2Q8N6R1 65 aa2.03□□□□□ -2.08
PTCH1-211ENST00000488809 A0A1B0GU69 56 aa2.02□□□□□ -2.09
PTCH1-211ENST00000488809 A8MU10 97 aa2.02□□□□□ -2.09
PTCH1-211ENST00000488809 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
PTCH1-211ENST00000488809 KRTAP19-4Q3LI73 84 aa2.02□□□□□ -2.09
PTCH1-211ENST00000488809 A0A1B0GV90 55 aa2.01□□□□□ -2.09
PTCH1-211ENST00000488809 OBSCNQ5VST9 7968 aa2.01□□□□□ -2.09
PTCH1-211ENST00000488809 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
PTCH1-211ENST00000488809 MT1AP04731 61 aa1.95□□□□□ -2.1
PTCH1-211ENST00000488809 K7ERU9 68 aa1.94□□□□□ -2.1
PTCH1-211ENST00000488809 KRTAP25-1Q3LHN0 102 aa1.94□□□□□ -2.1
PTCH1-211ENST00000488809 KRTAP6-1Q3LI64 71 aa1.93□□□□□ -2.1
PTCH1-211ENST00000488809 PRR15LQ9BU68 103 aa1.93□□□□□ -2.1
PTCH1-211ENST00000488809 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
PTCH1-211ENST00000488809 KRTAP15-1Q3LI76 137 aa1.9□□□□□ -2.11
PTCH1-211ENST00000488809 LCE3CQ5T5A8 94 aa1.9□□□□□ -2.11
PTCH1-211ENST00000488809 KRTAP6-2Q3LI66 62 aa1.89□□□□□ -2.11
PTCH1-211ENST00000488809 H7BZZ5 65 aa1.87□□□□□ -2.11
PTCH1-211ENST00000488809 COX7CP15954 63 aa1.86□□□□□ -2.11
PTCH1-211ENST00000488809 KRTAP23-1A1A580 65 aa1.85□□□□□ -2.11
PTCH1-211ENST00000488809 UQCR11O14957 56 aa1.84□□□□□ -2.11
PTCH1-211ENST00000488809 K7ERS5 55 aa1.83□□□□□ -2.12
PTCH1-211ENST00000488809 KRTAP5-1Q6L8H4 278 aa1.83□□□□□ -2.12
PTCH1-211ENST00000488809 MT3P25713 68 aa1.82□□□□□ -2.12
PTCH1-211ENST00000488809 LINC01558Q9Y6Z2 57 aa1.8□□□□□ -2.12
PTCH1-211ENST00000488809 MIR22HGQ0VDD5 57 aa1.76□□□□□ -2.13
PTCH1-211ENST00000488809 KRTAP9-6A8MVA2 160 aa1.75□□□□□ -2.13
PTCH1-211ENST00000488809 ATP5EP56381 51 aaPredicted RBP1.75□□□□□ -2.13
PTCH1-211ENST00000488809 RPS28P62857 69 aaKnown RBP1.73□□□□□ -2.13
PTCH1-211ENST00000488809 LCE1EQ5T753 118 aa1.71□□□□□ -2.14
PTCH1-211ENST00000488809 ANAPC13Q9BS18 74 aa1.68□□□□□ -2.14
PTCH1-211ENST00000488809 CDC42SE1Q9NRR8 79 aa1.67□□□□□ -2.14
PTCH1-211ENST00000488809 LCE1BQ5T7P3 118 aa1.62□□□□□ -2.15
PTCH1-211ENST00000488809 CCDC179H3BU77 68 aa1.61□□□□□ -2.15
PTCH1-211ENST00000488809 Q1T7F1 81 aa1.61□□□□□ -2.15
PTCH1-211ENST00000488809 ROMO1P60602 79 aa1.6□□□□□ -2.15
PTCH1-211ENST00000488809 TMEM258P61165 79 aa1.6□□□□□ -2.15
PTCH1-211ENST00000488809 KRTAP4-4Q9BYR3 166 aa1.6□□□□□ -2.15
PTCH1-211ENST00000488809 V9GYY9 64 aa1.6□□□□□ -2.15
PTCH1-211ENST00000488809 LCE1CQ5T751 118 aa1.59□□□□□ -2.15
PTCH1-211ENST00000488809 PSPHP1O15172 72 aa1.58□□□□□ -2.16
PTCH1-211ENST00000488809 A6NED7 52 aa1.54□□□□□ -2.16
PTCH1-211ENST00000488809 KRTAP5-11Q6L8G4 156 aa1.5□□□□□ -2.17
PTCH1-211ENST00000488809 LCE1FQ5T754 118 aa1.49□□□□□ -2.17
PTCH1-211ENST00000488809 PHGR1C9JFL3 82 aa1.44□□□□□ -2.18
PTCH1-211ENST00000488809 LCE3DQ9BYE3 92 aa1.35□□□□□ -2.19
PTCH1-211ENST00000488809 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
PTCH1-211ENST00000488809 MUC19Q7Z5P9 8384 aa1.24□□□□□ -2.21
PTCH1-211ENST00000488809 H3BS24 57 aa1.23□□□□□ -2.21
PTCH1-211ENST00000488809 LCE3EQ5T5B0 92 aa1.23□□□□□ -2.21
PTCH1-211ENST00000488809 BRK1Q8WUW1 75 aa1.12□□□□□ -2.23
PTCH1-211ENST00000488809 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
PTCH1-211ENST00000488809 SVIPQ8NHG7 77 aa1.02□□□□□ -2.25
PTCH1-211ENST00000488809 PMAIP1Q13794 54 aa0.97□□□□□ -2.25
PTCH1-211ENST00000488809 LUZP6Q538Z0 58 aa0.95□□□□□ -2.26
PTCH1-211ENST00000488809 PRAC1Q96KF2 57 aa0.95□□□□□ -2.26
PTCH1-211ENST00000488809 PCP4P48539 62 aa0.94□□□□□ -2.26
PTCH1-211ENST00000488809 A0A0A0MQY5 61 aa0.9□□□□□ -2.27
PTCH1-211ENST00000488809 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
PTCH1-211ENST00000488809 PRM1P04553 51 aa0.79□□□□□ -2.28
PTCH1-211ENST00000488809 NDUFAF8A1L188 74 aa0.72□□□□□ -2.29
PTCH1-211ENST00000488809 KTN1-AS1Q86SY8 53 aa0.71□□□□□ -2.3
PTCH1-211ENST00000488809 PRO0628Q9UI54 55 aa0.66□□□□□ -2.3
PTCH1-211ENST00000488809 INE1O15225 51 aa0.32□□□□□ -2.36
Retrieved 78 of 20,778 RNA–protein pairs in 81.3 ms