RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	ROMO1	P60602	79 aa		4.77	□□□□□ -1.65
SREBF1-215	ENST00000487401	KRTAP25-1	Q3LHN0	102 aa		4.77	□□□□□ -1.65
SREBF1-215	ENST00000487401	KRTAP12-1	P59990	96 aa		4.7	□□□□□ -1.66
SREBF1-215	ENST00000487401	KRTAP19-7	Q3SYF9	63 aa		4.66	□□□□□ -1.66
SREBF1-215	ENST00000487401	SPINT4	Q6UDR6	99 aa		4.65	□□□□□ -1.67
SREBF1-215	ENST00000487401	MT1E	P04732	61 aa		4.64	□□□□□ -1.67
SREBF1-215	ENST00000487401	LCE5A	Q5TCM9	118 aa		4.64	□□□□□ -1.67
SREBF1-215	ENST00000487401	GPR98	Q8WXG9	6306 aa		4.64	□□□□□ -1.67
SREBF1-215	ENST00000487401	KRTAP19-3	Q7Z4W3	81 aa		4.63	□□□□□ -1.67
SREBF1-215	ENST00000487401	DST	Q03001	7570 aa	Known RBP	4.62	□□□□□ -1.67
SREBF1-215	ENST00000487401	KRTAP19-5	Q3LI72	72 aa		4.54	□□□□□ -1.68
SREBF1-215	ENST00000487401	KRTAP4-9	Q9BYQ8	210 aa		4.54	□□□□□ -1.68
SREBF1-215	ENST00000487401	MT1G	P13640	62 aa		4.52	□□□□□ -1.69
SREBF1-215	ENST00000487401	C10orf95	Q9H7T3	257 aa		4.51	□□□□□ -1.69
SREBF1-215	ENST00000487401	PP632	Q6XCG6	107 aa		4.5	□□□□□ -1.69
SREBF1-215	ENST00000487401	MT1M	Q8N339	61 aa		4.42	□□□□□ -1.7
SREBF1-215	ENST00000487401	TNP1	P09430	55 aa		4.41	□□□□□ -1.7
SREBF1-215	ENST00000487401	LCE1D	Q5T752	114 aa		4.41	□□□□□ -1.7
SREBF1-215	ENST00000487401	MT1L	Q93083	61 aa		4.41	□□□□□ -1.7
SREBF1-215	ENST00000487401	HMCN1	Q96RW7	5635 aa		4.4	□□□□□ -1.7
SREBF1-215	ENST00000487401	LCE4A	Q5TA78	99 aa		4.39	□□□□□ -1.71
SREBF1-215	ENST00000487401	LCE3A	Q5TA76	89 aa		4.38	□□□□□ -1.71
SREBF1-215	ENST00000487401	MT4	P47944	62 aa		4.37	□□□□□ -1.71
SREBF1-215	ENST00000487401		A0A0A0MQY5	61 aa		4.34	□□□□□ -1.71
SREBF1-215	ENST00000487401	KRTAP15-1	Q3LI76	137 aa		4.32	□□□□□ -1.72
SREBF1-215	ENST00000487401	KRTAP4-3	Q9BYR4	195 aa		4.32	□□□□□ -1.72
SREBF1-215	ENST00000487401	AHNAK2	Q8IVF2	5795 aa		4.29	□□□□□ -1.72
SREBF1-215	ENST00000487401	KRTAP5-4	Q6L8H1	288 aa		4.25	□□□□□ -1.73
SREBF1-215	ENST00000487401	KRTAP23-1	A1A580	65 aa		4.24	□□□□□ -1.73
SREBF1-215	ENST00000487401	KRTAP12-3	P60328	96 aa		4.23	□□□□□ -1.73
SREBF1-215	ENST00000487401	KRTAP4-6	Q9BYQ5	205 aa		4.21	□□□□□ -1.74
SREBF1-215	ENST00000487401	KRTAP4-7	Q9BYR0	210 aa		4.19	□□□□□ -1.74
SREBF1-215	ENST00000487401	KRTAP5-10	Q6L8G5	202 aa		4.13	□□□□□ -1.75
SREBF1-215	ENST00000487401	NDUFAF8	A1L188	74 aa		4.11	□□□□□ -1.75
SREBF1-215	ENST00000487401	KRTAP20-2	Q3LI61	65 aa		4.04	□□□□□ -1.76
SREBF1-215	ENST00000487401	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.04	□□□□□ -1.76
SREBF1-215	ENST00000487401	KRTAP12-4	P60329	112 aa		4.03	□□□□□ -1.76
SREBF1-215	ENST00000487401	SPRR5	A0A1B0GTR4	108 aa		4.02	□□□□□ -1.77
SREBF1-215	ENST00000487401	KRTAP5-3	Q6L8H2	238 aa		4.02	□□□□□ -1.77
SREBF1-215	ENST00000487401	KRTAP19-4	Q3LI73	84 aa		3.99	□□□□□ -1.77
SREBF1-215	ENST00000487401	KRTAP5-7	Q6L8G8	165 aa		3.99	□□□□□ -1.77
SREBF1-215	ENST00000487401	LOC100996750	A0A140TA64	210 aa		3.97	□□□□□ -1.77
SREBF1-215	ENST00000487401	LUZP6	Q538Z0	58 aa		3.96	□□□□□ -1.78
SREBF1-215	ENST00000487401	SYNE1	Q8NF91	8797 aa	Known RBP	3.94	□□□□□ -1.78
SREBF1-215	ENST00000487401	LCE3C	Q5T5A8	94 aa		3.88	□□□□□ -1.79
SREBF1-215	ENST00000487401	MT1A	P04731	61 aa		3.75	□□□□□ -1.81
SREBF1-215	ENST00000487401	KRTAP6-1	Q3LI64	71 aa		3.74	□□□□□ -1.81
SREBF1-215	ENST00000487401	KRTAP4-11	Q9BYQ6	195 aa		3.72	□□□□□ -1.81
SREBF1-215	ENST00000487401	KRTAP5-2	Q701N4	177 aa		3.7	□□□□□ -1.82
SREBF1-215	ENST00000487401	KRTAP9-4	Q9BYQ2	154 aa		3.66	□□□□□ -1.82
SREBF1-215	ENST00000487401	AHNAK	Q09666	5890 aa	Known RBP	3.63	□□□□□ -1.83
SREBF1-215	ENST00000487401	KRTAP9-6	A8MVA2	160 aa		3.62	□□□□□ -1.83
SREBF1-215	ENST00000487401	KRTAP6-2	Q3LI66	62 aa		3.61	□□□□□ -1.83
SREBF1-215	ENST00000487401	KRTAP5-8	O75690	187 aa		3.58	□□□□□ -1.84
SREBF1-215	ENST00000487401	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.57	□□□□□ -1.84
SREBF1-215	ENST00000487401	MUC5AC	P98088	5654 aa		3.53	□□□□□ -1.84
SREBF1-215	ENST00000487401	OBSCN	Q5VST9	7968 aa		3.48	□□□□□ -1.85
SREBF1-215	ENST00000487401	MT3	P25713	68 aa		3.47	□□□□□ -1.85
SREBF1-215	ENST00000487401	KRTAP9-9	Q9BYP9	154 aa		3.46	□□□□□ -1.86
SREBF1-215	ENST00000487401	INE1	O15225	51 aa		3.43	□□□□□ -1.86
SREBF1-215	ENST00000487401	KRTAP5-1	Q6L8H4	278 aa		3.35	□□□□□ -1.87
SREBF1-215	ENST00000487401	LCE1E	Q5T753	118 aa		3.19	□□□□□ -1.9
SREBF1-215	ENST00000487401	LCE1B	Q5T7P3	118 aa		3.05	□□□□□ -1.92
SREBF1-215	ENST00000487401	KRTAP4-2	Q9BYR5	136 aa		3	□□□□□ -1.93
SREBF1-215	ENST00000487401	LCE1C	Q5T751	118 aa		2.95	□□□□□ -1.94
SREBF1-215	ENST00000487401	KRTAP4-12	Q9BQ66	201 aa		2.94	□□□□□ -1.94
SREBF1-215	ENST00000487401	LCE3D	Q9BYE3	92 aa		2.79	□□□□□ -1.96
SREBF1-215	ENST00000487401	LCE3E	Q5T5B0	92 aa		2.72	□□□□□ -1.97
SREBF1-215	ENST00000487401	KRTAP5-11	Q6L8G4	156 aa		2.67	□□□□□ -1.98
SREBF1-215	ENST00000487401	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.66	□□□□□ -1.98
SREBF1-215	ENST00000487401	LCE1F	Q5T754	118 aa		2.64	□□□□□ -1.99
SREBF1-215	ENST00000487401	PRM1	P04553	51 aa		2.51	□□□□□ -2.01
SREBF1-215	ENST00000487401	KRTAP21-2	Q3LI59	83 aa		2.45	□□□□□ -2.02
SREBF1-215	ENST00000487401	PHGR1	C9JFL3	82 aa		2.44	□□□□□ -2.02
SREBF1-215	ENST00000487401	KRTAP4-4	Q9BYR3	166 aa		2.29	□□□□□ -2.04
SREBF1-215	ENST00000487401	MUC19	Q7Z5P9	8384 aa		2.17	□□□□□ -2.06
SREBF1-215	ENST00000487401	KRTAP21-1	Q3LI58	79 aa		1.86	□□□□□ -2.11
SREBF1-215	ENST00000487401	MUC16	Q8WXI7	14507 aa		1.53	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 164.5 ms