RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 KRTAP2-1Q9BYU5 128 aa2.72□□□□□ -1.97
VPS50-218ENST00000485994 LINC01558Q9Y6Z2 57 aa2.72□□□□□ -1.97
VPS50-218ENST00000485994 A0A1B0GU33 70 aa2.71□□□□□ -1.98
VPS50-218ENST00000485994 MT3P25713 68 aa2.71□□□□□ -1.98
VPS50-218ENST00000485994 A0A1B0GU69 56 aa2.7□□□□□ -1.98
VPS50-218ENST00000485994 SPATA8Q6RVD6 105 aa2.7□□□□□ -1.98
VPS50-218ENST00000485994 CAMK2N1Q7Z7J9 78 aa2.7□□□□□ -1.98
VPS50-218ENST00000485994 SPRR2DP22532 72 aa2.69□□□□□ -1.98
VPS50-218ENST00000485994 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
VPS50-218ENST00000485994 A0A0A0MQY5 61 aa2.67□□□□□ -1.98
VPS50-218ENST00000485994 KRTAP12-1P59990 96 aa2.65□□□□□ -1.99
VPS50-218ENST00000485994 A0A0D9SG42 100 aa2.64□□□□□ -1.99
VPS50-218ENST00000485994 A8MU10 97 aa2.64□□□□□ -1.99
VPS50-218ENST00000485994 KRTAP19-7Q3SYF9 63 aa2.64□□□□□ -1.99
VPS50-218ENST00000485994 SMIM26A0A096LP01 95 aa2.63□□□□□ -1.99
VPS50-218ENST00000485994 LCE1FQ5T754 118 aa2.63□□□□□ -1.99
VPS50-218ENST00000485994 SPINT4Q6UDR6 99 aa2.63□□□□□ -1.99
VPS50-218ENST00000485994 Q1T7F1 81 aa2.62□□□□□ -1.99
VPS50-218ENST00000485994 PRR15LQ9BU68 103 aa2.62□□□□□ -1.99
VPS50-218ENST00000485994 DSTQ03001 7570 aaKnown RBP2.61□□□□□ -1.99
VPS50-218ENST00000485994 RPS28P62857 69 aaKnown RBP2.61□□□□□ -1.99
VPS50-218ENST00000485994 MT1EP04732 61 aa2.6□□□□□ -1.99
VPS50-218ENST00000485994 KRTAP19-3Q7Z4W3 81 aa2.59□□□□□ -1.99
VPS50-218ENST00000485994 V9GYY9 64 aa2.58□□□□□ -2
VPS50-218ENST00000485994 UQCR11O14957 56 aa2.57□□□□□ -2
VPS50-218ENST00000485994 PSPHP1O15172 72 aa2.57□□□□□ -2
VPS50-218ENST00000485994 MT1GP13640 62 aa2.56□□□□□ -2
VPS50-218ENST00000485994 KRTAP19-5Q3LI72 72 aa2.55□□□□□ -2
VPS50-218ENST00000485994 LCE3CQ5T5A8 94 aa2.55□□□□□ -2
VPS50-218ENST00000485994 MIR22HGQ0VDD5 57 aa2.54□□□□□ -2
VPS50-218ENST00000485994 C10orf95Q9H7T3 257 aa2.54□□□□□ -2
VPS50-218ENST00000485994 TNP1P09430 55 aa2.53□□□□□ -2
VPS50-218ENST00000485994 PP632Q6XCG6 107 aa2.52□□□□□ -2.01
VPS50-218ENST00000485994 MT1LQ93083 61 aa2.49□□□□□ -2.01
VPS50-218ENST00000485994 LCE3AQ5TA76 89 aa2.48□□□□□ -2.01
VPS50-218ENST00000485994 MT1MQ8N339 61 aa2.47□□□□□ -2.01
VPS50-218ENST00000485994 A6NED7 52 aa2.45□□□□□ -2.02
VPS50-218ENST00000485994 CDC42SE1Q9NRR8 79 aa2.42□□□□□ -2.02
VPS50-218ENST00000485994 KRTAP12-3P60328 96 aa2.4□□□□□ -2.03
VPS50-218ENST00000485994 KRTAP25-1Q3LHN0 102 aa2.4□□□□□ -2.03
VPS50-218ENST00000485994 K7ERS5 55 aa2.39□□□□□ -2.03
VPS50-218ENST00000485994 HMCN1Q96RW7 5635 aa2.39□□□□□ -2.03
VPS50-218ENST00000485994 LCE3EQ5T5B0 92 aa2.33□□□□□ -2.04
VPS50-218ENST00000485994 AHNAK2Q8IVF2 5795 aa2.32□□□□□ -2.04
VPS50-218ENST00000485994 MT4P47944 62 aa2.32□□□□□ -2.04
VPS50-218ENST00000485994 ROMO1P60602 79 aa2.32□□□□□ -2.04
VPS50-218ENST00000485994 GPR98Q8WXG9 6306 aa2.32□□□□□ -2.04
VPS50-218ENST00000485994 KRTAP5-5Q701N2 237 aaPredicted RBP2.3□□□□□ -2.04
VPS50-218ENST00000485994 SPRR5A0A1B0GTR4 108 aa2.27□□□□□ -2.05
VPS50-218ENST00000485994 KRTAP5-8O75690 187 aa2.27□□□□□ -2.05
VPS50-218ENST00000485994 BRK1Q8WUW1 75 aa2.26□□□□□ -2.05
VPS50-218ENST00000485994 KRTAP5-10Q6L8G5 202 aa2.24□□□□□ -2.05
VPS50-218ENST00000485994 KRTAP12-4P60329 112 aa2.23□□□□□ -2.05
VPS50-218ENST00000485994 KRTAP20-2Q3LI61 65 aa2.23□□□□□ -2.05
VPS50-218ENST00000485994 SYNE1Q8NF91 8797 aaKnown RBP2.2□□□□□ -2.06
VPS50-218ENST00000485994 PRAC1Q96KF2 57 aa2.19□□□□□ -2.06
VPS50-218ENST00000485994 KRTAP5-7Q6L8G8 165 aa2.17□□□□□ -2.06
VPS50-218ENST00000485994 NDUFAF8A1L188 74 aa2.15□□□□□ -2.07
VPS50-218ENST00000485994 MT1AP04731 61 aa2.13□□□□□ -2.07
VPS50-218ENST00000485994 PMAIP1Q13794 54 aa2.13□□□□□ -2.07
VPS50-218ENST00000485994 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
VPS50-218ENST00000485994 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
VPS50-218ENST00000485994 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
VPS50-218ENST00000485994 PRO0628Q9UI54 55 aa2.1□□□□□ -2.07
VPS50-218ENST00000485994 KRTAP6-2Q3LI66 62 aa1.99□□□□□ -2.09
VPS50-218ENST00000485994 KTN1-AS1Q86SY8 53 aa1.97□□□□□ -2.09
VPS50-218ENST00000485994 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
VPS50-218ENST00000485994 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
VPS50-218ENST00000485994 MUC5ACP98088 5654 aa1.89□□□□□ -2.11
VPS50-218ENST00000485994 MUC19Q7Z5P9 8384 aa1.85□□□□□ -2.11
VPS50-218ENST00000485994 LCE3DQ9BYE3 92 aa1.73□□□□□ -2.13
VPS50-218ENST00000485994 LUZP6Q538Z0 58 aa1.63□□□□□ -2.15
VPS50-218ENST00000485994 KRTAP21-2Q3LI59 83 aa1.59□□□□□ -2.15
VPS50-218ENST00000485994 PHGR1C9JFL3 82 aa1.31□□□□□ -2.2
VPS50-218ENST00000485994 INE1O15225 51 aa1.2□□□□□ -2.22
VPS50-218ENST00000485994 PRM1P04553 51 aa1.2□□□□□ -2.22
VPS50-218ENST00000485994 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
VPS50-218ENST00000485994 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 111.6 ms